GgaINT0145567 @ galGal3
Intron Retention
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:347936-348882:+
Coord C1 exon
chr28:347936-348058
Coord A exon
chr28:348059-348759
Coord C2 exon
chr28:348760-348882
Length
701 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TCATCCTTCCATCTTTTCAGATA
3' ss Score
11.25
Exon sequences
Seq C1 exon
ACATTGATGAATGCACTTTCCAGAATATCTGTGTATTTGGGACCTGCCAGAACCTGCCTGGCATGTTCCGGTGTGCCTGTGATGATGGCTATGAACTGGACAGAAGTGGAGGCAACTGCACAG
Seq A exon
GTACAGAACTTCTGTGGGTCCATGGGATGAGGCTCAACACAACATGGTGCAGCCTCGCCTTGAATATTGTTTGCAGTTCTGGGCTGCAAAGTATAAAAAGGATGCTAAGATTCTTAAAAGCATCCAGAAAAGGGCATCAAAGCTGGTAAAAGGGCTGCAAGACTTATCCTATGAGGAGAAGCTAAGGACATTCAAGTTTTTTAGGTTAGAGAAAAGGAAGTTAAGAGGTGACCTCACTGACCTCTACAACTTCCTGAGGAGGGGAAGCAGAGGCGGAGGTCCTGATCTCTTCTTCATGGTATCTGATGGCAGGATAAGTGGGAACAGTGCAAAGCTGCACCAGGGGAGGTTCAGACTGGACATTAGGAAAAACTTGAAGGTGGTCAAACACTGAAACGGGCTTCCTAGAGAGGCTGTTATGCCCCATGCCTGTTCAGCGATCAAGAGGCATTCAGACAATGCCCTCTTTAATTTGCTTTGACTGTTGGTTAGCCCTGAAGTGATCAGGCAGTTGGACTTGATGCTCTTTGTAGGTCCCTTCCGACCGAGTTATGCTGTGAGTGTATTCTGCGAGCCTTGCAAACGTCATGGCTGTGGGAACACAGCCTGTACAGACCACACAGAACTTAGGGTAGGGACTGCCATTTCTGTGGCAGTCTTCATCATTCTTTTCAGTCTTTATCATCCTTCCATCTTTTCAG
Seq C2 exon
ATATCAACGAATGTGCAGACCCCGTGAACTGTATCAACGGCCTGTGCGTCAACACTCCGGGCAGCTACCTGTGCAACTGTCCACAAGACTTTGAGTTGAACCCCACTGGTGTGGGCTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327:ENSGALT00000000433:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=PU(95.3=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGATGAATGCACTTTCCAGA
R:
CCACACAGCCCACACCAG
Band lengths:
246-947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]