GgaINT0145575 @ galGal3
Intron Retention
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:353431-354111:+
Coord C1 exon
chr28:353431-353556
Coord A exon
chr28:353557-353985
Coord C2 exon
chr28:353986-354111
Length
429 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
CGTATGTGCTTCTCCCGCAGACA
3' ss Score
10.45
Exon sequences
Seq C1 exon
ATATCGATGAGTGCAGCGAGATCCCTGCTATCTGTACCAATGGTGTCTGCATCAACCAGATTGGCAGCTTCCGCTGTGAGTGCCCCATTGGATTCAGCTACAACAACATACTGCTCATCTGTGAAG
Seq A exon
GTAACGGTGGCCAGGACTGCTGCTATGGGTGGCTGGGAGGCTGAGGGGGCTGCAGTGTAGCAGTGGCACCTCCTTCACTCATGGTGCATCACAGCCAGGACTGTCAGCAGAGATGGAACAGAATCTGCATGTTCTCAGCCATCATTTCTCTTGAAATAATTTTAATTTTCCACGCTAATGGTTGGACAAAAATTGCTGATGTTCATGAATCTTCCTGTCCGTTTCTCCTCCTTTGTTCCTTGGCATGGGTTGTTGGGTTTAAAAGTGTTTAAAAGAATTGTACCTAAAATGCATTTTATTACTTAAAAAAAAAATAAAAAATTGACACTGGTTGAAGCAAACTAAGGGTTAAAATTCAGGTGACTCCACTGAGCCTCTCCAGCCCCAGCAGGACGATGCCCCAACAGCCCGTATGTGCTTCTCCCGCAG
Seq C2 exon
ACATTGATGAATGCAGCAGTGGAGAGAACCTCTGCCAGCGCAATGCTGACTGCATCAACATCCCAGGCAGCTACAGGTGCGAATGCTCGACTGGATACAAGCTGTCACCTAGCGGAGCCTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327:ENSGALT00000000433:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGTGCAGCGAGATCCCT
R:
CACGCAGGCTCCGCTAGG
Band lengths:
246-675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]