GgaINT0145656 @ galGal3
Intron Retention
Gene
ENSGALG00000024298 | ADAMTSL5
Description
NA
Coordinates
chr28:2568857-2569469:-
Coord C1 exon
chr28:2569369-2569469
Coord A exon
chr28:2568952-2569368
Coord C2 exon
chr28:2568857-2568951
Length
417 bp
Sequences
Splice sites
5' ss Seq
CTGACAGGA
5' ss Score
-9.17
3' ss Seq
CATTCCGCCCTGACTCCCTGCCC
3' ss Score
-3.16
Exon sequences
Seq C1 exon
AGCGTTGGCTGTGATGGGATGCTGGGCACGGGAGCACAGCCCCGTGTCTGCAGCCGGTGCGGCGGTTGGCAGGATGGGTGCCTCTTTGTGCCCCGGCTCTG
Seq A exon
ACAGGACACGGAGCCCTTCTCCGGTGAATGAACATTGCCCCGGCCCCTCCATGGGTGAATGCTTTGGCTCTTGGCTTCCCTGTTCTATTGCCCTCTGCCCGCGTTCCCTGCAACCCCCCATCACCTCTGGGGTGCTGCTATGATCTGGTGGTCCCCGGGGCTGTTCAGGGCTCTCCAGGATGCACCCAGGGCGGTCCACGTCCCCTGTTGGGGTCCTGGCTGTGGTGTGGGAATGCAGATGGCCACGCATGACCTGCATGTCCCACTGCATGGGGTCGGGCGGGGTCGATGCCATGGGGGTCCCCCACTGCCCACCTCCCCCCACCCACCTCTCCTCACTCACCCTGTGGGTGTCCCAGCTCTGGCCCTGCTGTCCCCATGATAACCCCTCGGGCCGCATTCCGCCCTGACTCCCTG
Seq C2 exon
CCCACCTCCAGGTCATTTTGGGTACATGAATGTGACCAAGATTCCCGCTGGGGCCACCAACATCAAGGTGACGGACAAGAGCCGCAACTTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298:ENSGALT00000041053:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(30.1=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCTGTGATGGGATGCTG
R:
AGAAAGTTGCGGCTCTTGTCC
Band lengths:
191-608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]