GgaINT0145726 @ galGal3
Intron Retention
Gene
ENSGALG00000002672 | SBNO2
Description
NA
Coordinates
chr28:2420193-2420597:-
Coord C1 exon
chr28:2420480-2420597
Coord A exon
chr28:2420299-2420479
Coord C2 exon
chr28:2420193-2420298
Length
181 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGTGACTTCTGTTCAAACAGGTG
3' ss Score
7.86
Exon sequences
Seq C1 exon
ATTGTATTTGATGAATGCCACAAAGCCAAAAATGCCAGCTCTACTAAAATGGGCAAAGCAGTGTTGGACCTTCAGAACAAACTGCCTCAAGCGAGGGTTGTTTACGCCAGTGCCACAG
Seq A exon
GTGAGCTTCTGTCAGCATGGAGGGGCACCGTGTGAGCAGATGCCAGGGCAGTACTTGGGAAGGTCCCTGGGTCTGGTAAGACATGATGGCAAGCGAGCATCCTTCTAGGCATTCGCTGTGCTAGAGTAAATGCTATTTACAACTGCTGTGGTTTTGCTGACAGTGACTTCTGTTCAAACAG
Seq C2 exon
GTGCCTCTGAGCCAAAAAACATGATCTATATGAGCCGCCTGGGAATCTGGGGGGAGGGAACCCCATTCCGAGCATTTGATGAGTTCCTGCATGCAATTGAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672:ENSGALT00000004211:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138721=AAA_34=FE(13.1=100)
A:
NA
C2:
PF138721=AAA_34=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATGAATGCCACAAAGCCA
R:
CTCTTTTCAATTGCATGCAGGA
Band lengths:
218-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]