GgaINT0145729 @ galGal3
Intron Retention
Gene
ENSGALG00000002672 | SBNO2
Description
NA
Coordinates
chr28:2418426-2419203:-
Coord C1 exon
chr28:2419027-2419203
Coord A exon
chr28:2418524-2419026
Coord C2 exon
chr28:2418426-2418523
Length
503 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
ATCCTTGTGTTTCCCTGTAGTGC
3' ss Score
9.17
Exon sequences
Seq C1 exon
TGGGCAGAGGCCTTGATGGTGTTCCAGCAGGCAGCTGACCTGATCGGCTTGGAGTCTCGGAAATCCCTGTGGGGTCAGTTCTGGTCAGCTCACCAGCGCTTCTTCAAGTATCTCTGCATTGCTGCTAAAGTCCGGCGCCTCGTTGAGCTTGCCAAGGAGGAGCTGGCAAAGGACAAG
Seq A exon
GTGTGGTATTGGAGGGTGGCTGTGTGCACAGCAGCTGTCAGTCTTAGATTCCAAGGGAAGTTTTGTTGTCTGTAACCAAAGGGAGTTAATTGTTTCTGGGAACGTTCGCAGTAATCTATACTGGGGAGTTAATGTCACCTTTTCTTCTGAGGCTGTTTGCTTCTGGTCGAACGTAGGCAAGCTGATTTGAAACAGCATTTTGGGCCATGTTCAAGCTAGAAGTGGTTCCAGGTGTTTCACCTTTAGCACAGCCCTATCCTTACATTTATCAGGATGTGATTTAGAAATTCCAGACAGAAACTACTTAGCAAAACCAGCTTCATAAAGCAAGTCATCCCCTCAGTGGTGTAGAGAGGTTTGAAAGATGGTTCTTGATCAGCAGCCTTGCTACAGCCTTTGGATAGGGCTGAAGGAAGATGTGCCTGGAACCATGAGGTGCAATCTCTTCAGTCTGTAGGTGCTTGCCCTGACCCCAGCTGTGCCATCCTTGTGTTTCCCTGTAG
Seq C2 exon
TGCATCGTCATCGGCCTGCAGTCCACTGGGGAGGCACGCACCCGAGAAGTCCTGGATGAGAATGATGGGCATCTCAACTGTTTTGTTTCTGCTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672:ENSGALT00000004211:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGCCTTGATGGTGTTCC
R:
TCTGCAGCAGAAACAAAACAGT
Band lengths:
271-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]