GgaINT0145737 @ galGal4
Intron Retention
Gene
ENSGALG00000002672 | SBNO2
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr28:2864479-2865024:-
Coord C1 exon
chr28:2864953-2865024
Coord A exon
chr28:2864588-2864952
Coord C2 exon
chr28:2864479-2864587
Length
365 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
ACTCTTGTCTCCTTTCACAGTAT
3' ss Score
8.78
Exon sequences
Seq C1 exon
GGTGCCTTAACTCACGGAGACCGGAGGGCCACTGAATCCCGAGACCTCAGCAAGTACAACTTTGAGAATAAG
Seq A exon
GTAACTTGCAGCTGTTCTCAGCGTAGCTCAGCCAAGGAGGGGTCAAAGCAGTGAGCGAGTGCCTTCAGTAGGAGCCATGGACAGGCAGATCATTGCTGGCATCTACAGGCAGGATCTGGCCTAGCAGCATCAGCACCCAGCACCCCAAGTGTGGCATCCAGAACTGAGTTGCTCTACCAGGGAGCAGCCCCTGTTCCCAGGGGAGCTAGTGTCATTGCTGGATGCGGGTGTGCAGGGTCCTACACTCTGGGCCCCGGGGACAGGGTATGTCCCTGACCCACAGCATCCCTCAGCACAGCCCTCTCTCAGTGGTGTTTCTCTGCAAGTCATTTCCTCCCATGTGTTACTCTTGTCTCCTTTCACAG
Seq C2 exon
TATGGGGCTAAAGCACTAGACAGAGTTCTCTCCACTATCCTCAACTACAAGGAGAACAGAGTTCCTGTGCCCAAGAGCTATGAGAGAGGAGAGGCTGCGTTTTTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672:ENSGALT00000004211:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=FE(8.2=100)
A:
NA
C2:
PF138711=Helicase_C_4=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]