GgaINT0145866 @ galGal3
Intron Retention
Gene
ENSGALG00000000307 | E1C668_CHICK
Description
NA
Coordinates
chr28:83783-87795:-
Coord C1 exon
chr28:87678-87795
Coord A exon
chr28:83902-87677
Coord C2 exon
chr28:83783-83901
Length
3776 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTTCCTCACCTGTTTTCCAGGGT
3' ss Score
10.32
Exon sequences
Seq C1 exon
AGCCATAGCCCTGCCTCTCAGTGCCAAACTGGGTGTGAAGGACAAGCTGAGACCTAAAGCTCAGCCCATCTCCATTCTGGAAACATTCTACACTGTGAATTGTAAGAACCCTAAAGAG
Seq A exon
GTGAGTCCTTTTTTCCTTTGCTTTTCTCTAGATTTAGCCCCGTCTATTTACCTAAATGAAATCATACTTGGATCTTGCATTTGGACACTCAACAGACCATAAGGAAGCACCGTAGCACCGGCCTCCTGGCACCAGCCAACTGCAAGAATCATCCTGGAAATGCTATAAGTAATCAGTTCTGCTTCTGAACGTGTGAGGATAACAGCTTTCCAGAGACAGCGCTCAAAAAAATTGAATCTCAGACTTGTTTGGACTGGAAACTTCTCTCCAAACTCCTGTTTGCTCGTTTGCCTTGTACATGGCTTTTCTTCATGTATTAGCAAATCACTGTCATATCAGCTCACTTGAACTGACTTCCCCTGTTGTGAATCCTTGCAGCTTAGCACATGTGGATTGCACGATTCTTTTAGTTCTGGGAGGCAGATCATTTTGTTCCTGTACAATCCACAGGTTTTTTGATCGGTCTTTCAGGAAGCCAGTTAAAATCTTCTCTCTCATCAGAGACACAAGGGCCATCAGAATACTGCAAGCACACATGGTAGATAGTTTTCCTATGGGAGAGTAAAAGAGTAATCTTGAAGATCTTGGCAGGATAATTTGGAGTTATAATGGCTGCTGCTGAGGAAAAAAAAGCATTGGCAGAACTGCAGATATTCTGTATTGTGATTTAACTTGTCAGTTAAGTCCCTGGATGTAACTCTGTTGTAGGTAAGGGAATCACTTTCAATTTCAAATTGATTTCAAATTTCAAATTGATGGCTAGCAAAGGTTCCCCACACCACTGTCTCAATCTCCCTCATCACAAGAATGGGAGGAGAAAATGAGGCAGAAAAGGGCTCAAGGGCTGAGATAAAGACAGGGAGAGCACTCACTAATTACAAGCAAAACAGAGTCAGCATAGGGAGATTAATGTATTTTATTGCCTATTACTAACGGCACAGAGCAGAGAGAACCGAAAGCAAACTAAAATACCTTTCCACAAATAAACACTCCTCTACCTCCTCCCCCCAAGCAGCACAGGGGGACAGGGAATGGGGCTGTGGTTAGTCCATGACACCTGGTCTCTACCACTCCTCCTTGGTCACTCTCTGCCCCTGCTCCACGTTGGTCCCTCCCATGGATACCATCCTTCCTGAACTGACCCTGTGTGGCCTTCCACAGGCTGCAGCTTTCCAAACACTGCACCAACATGGGGCCCCATGGGTGGCAGCTCCCCCAGTCCTCCTGCTGCACTGCAAACTGATCTCCATGGGTGGCAGCTCCAGCCCAGAGCTGCTCCTGCTGGGTTCCATGGACTGCAGCCTCCTCCAGGACACATCCACTGCAGCACCATGGGCTCCTCCATGGCTGCATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAGCAGCTGGAACTGGATCCGATCTGACATGGGGCAACTGCTGGGCTCTGCTCACAGAGGCCACCCCTGCTAACAAAACTTTGCTGTGTAAGTCCAATACAACATTACCTTTCATCTCCTTTTGCAGGCTGTCTTGGCCTTGAAGCAAAAGCTAATAGCCACTGCCAAGGAGTAGGGATTCCAGTCCCACTGGACAGTCCTAGTGCAAACAAGTTAATGCCTTGTCAAGGTTGTTACAGCATGTTTCATATGGCAGGGGGGCATATGGAGCCCCAGGACATTCAGCAGCAGCTTAAAAGTAAAAGAACAGAGGCTAAAGTAAGAATGCAGGCATTCATCTGGGTTGTGCAGCCAGCCTCTTTCCCTAGCAATGGGAAGGAATGTTCTCAGGAGCACTTGCCATGGTCCCTGACCTCCTTCATGCCTGTCTGAGAAATTCACACTTTTCTCAGTAGAACTACTCCTGTTGCAGAGATCTAACTCAAGGCCTGTCTCTGCAGGCAGACTTTCTACACAGCTGTCACTGCACCCCCAGTGCACTGAAGGAGCAGAAATCTGCACTTTTGTCCTAGAAAATCTGGAATATCAGAGTGTATCCTGGCTGTGAGATTTCTGATATCAGTGTGACACAGGGCAAAACTCTGCAACTGGCCAATACCTTACTCTCTCATTCACCACTTGCATCTCAGCCAGTCTTTTGGCTTCCTTTCCCTCCTGTGAGCTCTCAGAATCCTGCTTATGAGGCAGCTTTTATAAGATGTAATTTTGCTGTTCTCAGCAGCCCTCACCTTGAGAGGGATATCACCTCATGGAGAATTGAAATGAATTGGAGAATTGAAATCACAGTCATCTGTGTGACTCCACCCCAAGAACAGAGGTCACTAGGTGAAAATAGAAAGAAATATATCTGAAAATGGTAATGGACGCAGATCTTTACAGTACTCTTGGGGTATGTAAAGCACTGTCATGTGAGACCTTTAGGGTGAACACATTCGTTGAAAACCTATTGCTTTACTAAACTATCCTTGATGACACTTCCAGAAGGAATATAGAAAATGATGAACTTCTTCTGTGTCACACAGCAAACTCTTTGGGAGCCCAAGGGCAAGAAGGAAGGTAATTGTAGTATTTCTGTGAGTAATCTATTGAATTCACCACAAAAGGAGAAGAACTGGTAGGAAAATGATGTTGCTCATTATGTTGGTCATGTTATTCTCTGATATTGCATAAGAATGCTGAAAGACTTGACAAAATCCAGTGTAGAACTTTAAAAATTATTTAAGCTTCGGTGAAACTTTATTGGAGTGACAGATTTAAGGGACTTCGGCCCTAAAGACAAATGGAGTAATTCAACAAGAAACACCTGTGAGGAGAAGAGACCACAGTTTGAAACTCTGTACCTAAGACTTTAACATAAAAAATAAAATGTAAGGTTTTAACATTTAGCATTAATAACTGGTTGCTTGCAAGCGGAAGTGAAAGATTTTCTGTTACCTGAAATCTCTATGCTAGGAATGGATTGCTGAATTCAGCTTGCTGAAAGATGCCTTAGCTTGAACAGACCTGGGCTTGCCAGGAACCTCCGGTGATGTTCTGTGGTGGCCCAGACCAGACGGCCCGGGAGCCTTCTGACCTTCAAACCTGAATCTGAACCCCACTTCCTCACCTGTTTTCCAG
Seq C2 exon
GGTGAGCTGATCAGTTTAGCCAAGCAATGTGACCTGCCAGTGAGAAAAGTGGAGAGGTGGTTTCGGCGCCGGAGGAACACCGACCGACCGAGCCTGTCGAAGAAGTTCTGCGAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000307:ENSGALT00000000407:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(45.6=65.0)
A:
NA
C2:
PF0004624=Homeobox=PD(50.9=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]