GgaINT1000230 @ galGal4
Intron Retention
Description
NA
Coordinates
AADN03010820.1:5158-8310:+
Coord C1 exon
AADN03010820.1:5158-5282
Coord A exon
AADN03010820.1:5283-8096
Coord C2 exon
AADN03010820.1:8097-8310
Length
2814 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GTGCATCCCTCCTGTTGCAGGTA
3' ss Score
10.42
Exon sequences
Seq C1 exon
GTCGGTGGGACGAAGACGGGAGTTGTGCGCTACGTGGGAGAGACAGACTTTGCCAAAGGAGAGTGGTGTGGCGTGGAGCTGGATGAGCCCCTGGGGAAGAACGATGGGGCTGTGGCTGGAACAAG
Seq A exon
GTACTGAGCACCCCAAACCCAGCCTGGGCACGTGGGGTCCAACCACCTCTTAGGTGACGGCACCAAACACCATTCAGGGCTGGGAGGGATGGCTGGGGTGCTTGGCTGGATGTGGCGGGGTGGGAGGAAGAATCCAGTTCTTGCTTTTTGGTTGTCATCTATTCTTGTATTAATTCTGTAGCGTAAATCATAGAATTGCTGGGGTTGGAGAAGACCACTAAGATCCCCAAGTCCAACCCCAACCCATCCCCACTGTCCCTACTGACCACGTCCCTCAGTGCCACATCTCCGTGGCCCTGGAACACCTCCAGGGATGGTGACCCCACCACTCTCCATGGGCAGCTGTGCCACCACTCGTTCCAAGAAGAAATTTTTCTTGATAGAATGACAGCTATTTGCTGATGGATCTTATCACCTCTCATCTCAATGGACTCTTCCATTATTTTTGTTTCAAAAAAAAGCCCCTGTTATATCTAGATAATCAGGCAGGGACACCCAACAAGCTTCCCAAGCAGTGGTGTTTCTGTTCATGTAGAAATTAGATGAGGGAGTGCCCCCAGCATCACATCCTGAGTTTGGTATTCGGATCTGAGTTACGGCTCAGTGCTTTGACCCTCATCCAACACAGGTGGAACTCATTTCCTGTCCTCCACGAGCCCCTTTCAGGGGAAATACAGTTGATTTCTCAGGGCTTCTTAAGGGAATCTCACATTAAAAGTGAGCTTTAACTTTGAAACAACTCAGGAACTGAGAGTTCCTCTGCTGTTAGATCTCAGGTTCTGTAATAAAGGTTTCCTGTGTTGAATCAGCAGTCATATGTTCTCATTTAAAATCAGAGAAACGCTGCCTTGTTCAATGTCAGGGCAAGAAAGCAGAGGATGATTGGCAGCAGATGGCTGAGTTCCAGCCTATTCTGAAATGAAAAGAATCAATGTGATGGAGTGGATCCAAGTCCCTGCTTTCTTTATCATGCAAAATAAATTATCTCTAAGCCTAATCTTCAGGTTGTCAAGAAATGATGTATTGTCTTTGCGCATATGGGATGTGTGGAAGGCAGATGTGAGTGGTCAGGGTGCTCTCTGCTTCTTGTCTTCACATCTCTACTGCTGGGTTTTGAAAACCCAGTTTTGGAAGGCCATCTTTCTTCTGGACCTGCTGCGTCATGGTTTTATTTTGCTGTGTTGTGTATCACGTCTGCAAGATGTCTCTTGTCTTGCATTTCATGCTTTGTTCCTGCTCTTGATTCCATGGCAGAATCAGGGAATCAGAGTGAATTCAGAGTTTCTGATTAAAGAGGGGAAATGGAGGGGAATCTGTAGGGTACCCCTGCCCCAGGCATCCCAGCCAATGATGCGCATCTCCTAGCATAGTGAACACATGTCCCTGCTCATCCCTTGAGCCTTCATCTAACTTTCTGGTTTTACAGCAGTGAAAATGCCTCACTGGTAGCTGCCAGCACACACTGATTTCGTCAGCAGGGTTTTGGAGGAAAGCCCTCATGATAAACCCGACTCCCTTGGGGCACACAGGCACCCCTTGGATTGCCTTCCCAGTGTTTGCCATGGCTGCTCGGTGTTCCTGATACTGCCCTGAGTTCATCCTGCCAGAATCAGTCTGGGAAGAGACTGCCAAGGGCTCTGCTTTGGTGCTTGTTGCCATCTAGTGAGTGTGCTTGGCCTGCCAGCCCAAGGCTCTGCTGCAGTAACTGGCTGCTGAGGTAGGGAAGGTAATGAGGGGTAAATGAGTGAGCAAAGGATTCCATCCCCATCCTTGCGGTGGTGAGCTCTCTGGGTGAGCTGATGGTAGATCAGCTGAATTTACTGATTCTCCTCAAGCTGAAGAAGGTTTTCTAGCAGATGTTTCTGCTGCCAAGTGTTCTGGACCCAATTCCTGTTTATGAACTGTATAAAGGTTAATTGCAACCACTTCCAATCTGGACTAAAAGTAGGTGGGTAGATGCAGTGTGATGCATGTTCTAATTTGCAAAGAGCTGCTGGGGGCTATGAGGGGCCATGCTGTAAATACCCAAGTACCAGTTTGTGCTTCGAACATGTAGACCAGTGCCATGCTGTTAGGCTGCCTGTGCCAGCTGTGGTTGAGAAGGTGATGCTGAGGAGGGCTTTGTCTGGCTTGCAAGAGGTCACGCAGATTTTCCTGCTTTTTTTTCCATTCTAGATTAAGGTCTGCCCTGTGGCAGGATGGATTTTCCAAACCCAAGAGCCTGTATTAGCAGCAAACAGTGGGCTAAGCAGTTTTGGATCATAGGGTCTTTTTTTAAAGATTTTTGGGGAGGGAGAGAGGGGGAGGGGAGGGGAATGGAGTTGAGCAGGTGTTGGAAAACAAATTGCTCTCATCTGGATGGGGATCAGACTGTTCTCTGGCCTCCCAAGCACACAGAGCTCTGTGACACAGCCCTGTGGCTGCTTCCAAGTTAGAAGGCAGTTGGGAAGCAGCTGCTCACGTCTGGAGAAGGAGGACTTGTGCTGGGCAGAGCATGAGCTGAAAGCTGCCACTCGTCATGCTCTGTAAGGACAAATTTACTGGTAGAACGTGGTACAGAGCCGTATGATTTGTGGATACGCTTTGCTATGCGGCTTTCTTGGAAGTGGGGTGGAGAGCACCCAGATGCTGGTTTGGGAAGGAGCATGTGTGCTCTCACTTTGTGTATTGGGATCCTATCTGGGCAACCATGTGGGTCTTTCCTGGCAGCTCATCAAGATGTGTAGCAATTAGTGCATGGCAATGCCCTTCTGTAGGGCTTGGGCGAGGTGGGTGCTGTCGCCCTTCTGACACAGTGCATCCCTCCTGTTGCAG
Seq C2 exon
GTATTTTCAGTGCCCTCCCAAGTTTGGCCTCTTTGCTCCCATCCACAAGGTGATTCGGATTGGGTTTCCATCAACCAGCCCTGCCAAGGCGAAGAAGAGCAAGCGGATGGCCATGGGAGTGTCTGCCCTCACCCACAGCCCCAGCAGCTCTTCCATCAGCTCCGTCAGCTCCGTGGCTTCCTCTGTTGGGGGCAGACCCAGCCGCAGTGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001291:ENSGALT00000001972:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.778
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]