GgaINT1000233 @ galGal4
Intron Retention
Description
NA
Coordinates
AADN03010820.1:24045-27412:+
Coord C1 exon
AADN03010820.1:24045-24230
Coord A exon
AADN03010820.1:24231-27349
Coord C2 exon
AADN03010820.1:27350-27412
Length
3119 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
CTGTCTGTTCTCTATTGCAGCCT
3' ss Score
12.04
Exon sequences
Seq C1 exon
GACAAGGAGAAGGCAGTGACGGACCAGAGGCGGTACTCCCTGATCGACCCCTCGTCGGAGTCGGAGGTGATCCGGCTGCAGCACCGCCTGGTCAGCACTGAGGACGTGCTGCGCAACGCACTGGAGCAGGGCCACCAGATGGAGAAGCTGATGGAAGCCATGAGGCTTTCCTCGGAGAAGACACAG
Seq A exon
GTAGAGCACATGGCCGTTTGTTGTCCCGGTGAAGATTTCGTGTGAGTCCTCCTTTCTTCCAGGAAGAGAACTATTTCTTGCCCTTGGGTTTAAAAACCAAAACAAAACTCAGGCTGCTAGTGGGATAATTCTTAGCTCATTTATGATGTCCTTTAGGACCATTTTGAGTGTGAAAGTTGAGCCTTTCTGCCATCCCTGCTCTTTGAGAGGGCTTTTCTTGCCATCCTTAAGCACTGACTTCAGAAGTGACTCTGGGAAAACATTCTTCATCTCTCCTATGAACTCCTGGAAGCATCTCCGTACCTGATCTAAGTGTGCTGCTGTACCACTGTGTTCCCAGTCAAGCTGCTCTCTTCTCTTCCCCACTTATCCTAGTCTACCTGTGTTTCTTCTCAGAAGGCAAAACTGCTTCTATTGTTGTCTTGCATCTTTCCTTGTGAAAATGAGGGCTGCAAATAAATGGGCTCTTCATGTTTGGCCTCTTCCACCACATACCCGAGTTGCTCAAGTCCTGACTAATTCCTCCAGTGCAGTGACCTGCCCCTTGTGCCAAGCCTTTAGCTTTGTAGGATAAGAGAATGCCTTGGGTTGGGAGGGACCTTAAAGATGGATTTGTGTCCTCTTTCACTCCAGCTGTATTTTCTCATCTGCTGTCAGGTGATGGCTCAGGTGCTTCTCTGATACTTGCTCACTTAAGTTCTGTGCTTGAAAATGTCCTTCCCTTGCAGTATTGAGTGACAGTTCACATTCGGATGGAGACAGAATAGTACACACAAGGACAAGGGGCAGAGTTTTACCCAATGCAAGTGTAGATATGTTGTGCTAGGTGATGTGGGGGTATCGTGTCTTCTCATTCTCTCACTGCCTTTGTGCAGTTTGCAGATGCTCCAAAGGGCCCTTTGCATTGCATGGAGGCAGTCAGGGGGATGCAAGGTAAAAAAGTGCAGTCCTGAGAGCAGTGCTGTCTCAGCTGAGCATCGAACTGGTGCTGACATCTCCTCCCATCCTGCAGTGCTGTCTGCTGGCACTGGACGGGATAGCTGTGGTGATGACAAGTTTGTGGCAGTCCAGGACGTGCCATAATATTGTCAAGATCTTCAGAGTGACTTCTGATCCTGCTGTTAATTGCTGTGCGTCAAATGAAAATGCACTGTGACAGCCTTGTCTGTTGTAAGCTATGGGAGGGGTGGGGAAAGTTATTCTGTTTGCTTTAATGCTAAGTCCCCTGAGAGCAGGAAATCCTCCTTTCCACCTTCCTGGCTCCAGAGGTGGTGATTATTTCTTCCCCAGCTGTAGAAAATAACCTTAAGGTGAGTTGGAATGGACTTGGTGAGGTCAGCTTAATCTGTCCTTGGCATTACTGTGATACCTTCATGCTAAGGTAATCCTTGAGATACGACAGGGATAGCATTATGCCTTCAACTACAAACTGCACTACCGAGAGACAGGGAGAGGATTACGGAGGGAATTGGGCTTCACACTTCCACTGATGTCAGGTTTGGGAAGTGCCCAACTTACAGGGAAGTCTGCATCAAAGCTCTCAGGTTTCAGCATGATGTCTGCTCGTCCTTTTGCCTATGAAGAGGAGCTGTTAATGGGGATTTGGGGCTGAGCCTGAGGACATCGCTGGCCTAAAGAGATCCAGGTGCAGCACTTCTGGAATCAGTAATGCTTCTCGAGAAGCCACGTTTCTGCTGTAATCCATTCTGCAGTGCCTTCTGACCTCCTGTCTCCTCTCTGACAGCAGCTGCTGCCCAGGGATCTGCCTTGGCATCGCTCTCCCTTTGTCTGCAGAGCCTTCACAGTGTGCTTGAGGAGGAAATCTCTAATTACCACAAGCTGCTGCTGCTCTCCCTTTGCAGGCTTAGTCAGCCCCTGCGCTCTGCAGCCCTTGATGTGCATGGCTGGCCTTGCCATTAGGCGAGGAGACTCAGGAGCTGGGGGAGCGTAATGGCACTGTATGTCTTTGTCTCGTTGTCTTGTAATTGCTGCCTTGCTGTTTCTGTGTGCAGCTGCAAAGTACTTGTCCTGTAATAGAGGAAGAGGGTCTTTCTGTCTTGGGAGGCCCTGGTCTTGTAGCTTTGCAGGAAATGACAAGGATTTGGCACCGAGACCTTTCCTCGGGATACATGCAGTGATTGCTCTGGGAGTCTACTTAATTTCAAGTGAATTACACCACTTTGTGTTCATTACTGTGAGCGTGCACTGAGACCACCCAGATTTCCAACCTGATCCCTGGCACCCCAGCTGCTCCGTGTGCAGACGGGTGTTCTTCAGCCAGGGAGGAGATGCTGACATGCACAGCACTTGCACTGCTGTGGCTGTGGGTGCAGCAGCCCAGGGCTGAGTCAGCACAGTGGCATTATTCCTCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCAGGCAGGACTCAAGAAGGGCATTCAGTGGGGGTTCCTACGTGATGGATTTAAGCCTGGCAGTCTTGTCTCATCTCCCCATAGCTTCTGGTTCAGCAATCCACCGACAACAGCGAATCTGATTACTGAGACCCAAACAACTGACGTGCGGCATGCCGTGACTTCAGGCTGCAGCTTTCTCCTCTTGTTTGTGCAGGTTGTACTGTCATCTGGAAGCTGAAGGGCTCCGTATTATCCCAGCTGAAGCAACATTATAAATGTTTAAAGTTCTTGTGCTTTCTAAAGATAGAACAGCCCGTCCTGGCTGCCAGGCTTGTCCCCAGGGATGGGAAGCAGGGAATGGCGATGTCCTTTTTGCTGCAGTGATGTTCCCCGTGCTGCACTGTCTGCAGCTAACGCTGCCCTTGGCTCACAGTTTGTTTACCAGGATTTAAGGGTCAGAAGTGAAGAGTTGCTCTGTATCCACATAGGAGCTCGGGGGATGTTTTATAGCTGGGAAGGATGTAATCCCTAATGTGGGGACTGGGCCAGAATGTGGGGATCAGGAGGCTTCTTGCCAAAAACGTTGTGATGTTTTTGCTTTCCTCTGTCCTTGCATGGAGTAGCCACTGAGTGTTGGGCTGCCAAGGGAGAAGGCAAACCCACCTCAGTCCCTGCAGGCAAGCAACGGTGTCCCTCTCCAGTAAGCACTGTCTGTTCTCTATTGCAG
Seq C2 exon
CCTGTTGGAAATTCCGGGTCTGCTAATGGGATTCACCAGCAGGATAAATCCCACAAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001291:ENSGALT00000001972:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]