GgaINT1000470 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZ45]
Coordinates
AADN03013081.1:2463-3176:-
Coord C1 exon
AADN03013081.1:3024-3176
Coord A exon
AADN03013081.1:2811-3023
Coord C2 exon
AADN03013081.1:2463-2810
Length
213 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GTTGTCTTTGCTGCTTGCAGGAG
3' ss Score
8.09
Exon sequences
Seq C1 exon
ACATCCCTGTTCTGCCTGGTGATTCCCCAGTGGAAGGCTATGATGATGCCAGGGAGGTTTCTGACCCTGGAGAGCATCCTGTCCCAGGGCAGGGAGACTGGCAAGTGCCTAGGGCACAGGAGGACGGAGAGGGACCCAGGGATGCTGCCAGAG
Seq A exon
GTGAGAGGGAAATGCAGTGCTGCAGCTTGCTGGGTGCCATCCCTGGGGCAGTAATGAGAGCCTCACCTCATGGCTTGGAGAACTCTCCTTGCGAGACTTCCATGGGGAGACAGGGACTGGGAGAGCAGGCTGAATGTCCCACAAAGGAGAAAAGTGATGGACCACCCAGGAGGAGCACCCCAAGGGGCAAACAGTTGTCTTTGCTGCTTGCAG
Seq C2 exon
GAGAGAGTGGGCACTCCTGGAGAAGTGCCGGAGCCCCTGAAGTTGATGGAGACACCTCACCTCTGTCCCTTGGGAGCACGGGCTATGATGATGCAGATGAGATGTCTCTGTCATAACCCTATTGGACACAAAGGCTGTGACACCAGAGCGCTAGGATGCCTGAGCTCTGGGACAAGAGACTCTGTCCCTGCCATGAAGTTGGGTGTAGACACAAAGGAGAGGTCAGTGCCGCTGGGAGAGCCGTGAGTGCCAGCAGCTGTTTTCACAGGGGCATCAGAAACAGCCATGTAATTCCTCCAAGTTTTATTCCTCTGCTTTTATGTTGTGCATTGCTACTGGTTCCTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002939:ENSGALT00000004639:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCCAGGGAGGTTTCTGA
R:
TTCATGGCAGGGACAGAGTCT
Band lengths:
307-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]