GgaINT1000485 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZ53]
Coordinates
JH376268.1:7076-8154:-
Coord C1 exon
JH376268.1:8008-8154
Coord A exon
JH376268.1:7274-8007
Coord C2 exon
JH376268.1:7076-7273
Length
734 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
3' ss Seq
CATCTCTTCCCCATCTCCAGGTT
3' ss Score
10.02
Exon sequences
Seq C1 exon
AGGCTGAAGGCCAGCTTGACGGCGTCTTCCTCGCTGAACGGCAGCAGCCTGGTGGTGGGCTCAGCCAGCACGATGGTGACCGCGCGCCCGGAGCAGAGCCAGATCCTCGTCCAGCACCCCGACGCTCCATCGCCAGCTCAGCCTCAG
Seq A exon
GTCTGCTGCTGCCAGCCCCGTGCTGGGGGTCACTGAGCCTCAGGGAGAGGGGAGCAAACCTCGCAGCCTCCTGGTTTGCTACATGGGTGAACAACTTTGTTTTTCCAGCACCGCTTCAGCACTGACGCTCTCAGACCAGGCAGAAAACTCCACCAAGGCGTTGATCTGCTTGACGGGGGCTGGAGCTCCGAAAGGATATTTTGCTCCCTTCTCCCCGCTCAATTACGAGGGTTAAACGCTCCCCTCTCAGGCAATCAGCCCCGGCAGCTCCTGCCAGCTCACCAAATGCCAGCCCTCCATCAGCGCCGCCACCTGCTCTGTCAGCTTTAATATCCATCTGCTGCCTGACAGCCCAGCCGCCGCAGAGCCCACCGGGTTGGGACCCCGCGCCCTCCCCACCATTTCTTTTGTTCTGGAATGAGGCTGGGATGCGGAGCTACAGAATCCTCCCTCCCCATTGCCTCCAGGGCTGTGTCTGGCTGAAGGCATTTGGAGAAAATGGAAAGCAAATTAATCTCGAAAGCAAATTGCCCACTCAGAAACCAGTTTGTTTGTGCTCTGCCTGTGGTTATGGAACCCAACTGGAGACGGCGCGTGGTTTCCATCCCCAAAGCAGATCCCTCTTCCCTCCTGCCCCGAGACCCCACACCTCCTCTGCCAGACCTGGTGGGAAGTGCTTGCTCCGGGCTCCGTTAGCTGCGTGCTCCCTTTCAGCATCTCTTCCCCATCTCCAG
Seq C2 exon
GTTTCCCCTGCCCAACCCACCCCCAGCACCGGCGGCCGGCGGAGGCGGACGGTGGATGAGGACCCCGATGAGCGCCGGCAGCGGTTCCTGGAGCGGAACAGAGCTGCTGCCTCACGCTGCCGGCAGAAACGCAAGCTGTGGGTGTCCTCCTTGGAGAAGAAAGCCGAGGAGCTCACAACGCAGAACATCCAGCTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003038:ENSGALT00000004807:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=NA C2=0.712
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0017016=bZIP_1=PU(70.3=68.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGCCAGCTTGACGG
R:
GCTCAGCTGGATGTTCTGCG
Band lengths:
342-1076
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]