GgaINT1000753 @ galGal4
Intron Retention
Description
NA
Coordinates
JH375182.1:304448-306382:+
Coord C1 exon
JH375182.1:304448-304729
Coord A exon
JH375182.1:304730-306214
Coord C2 exon
JH375182.1:306215-306382
Length
1485 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCTTTCCTCTTTTTCCACAGTTC
3' ss Score
11.61
Exon sequences
Seq C1 exon
CTCGCCCAGTGATACTGGACAGTGGTAGCTACCCATCAGAAGTAGTTGCCGCCCAGGGAAGTGAAATTTCCCTAGAATGCAAAGCTCAGGGTATTCCAGAGCCAGCAGTAACATGGATGAAGGATGGCCGTCCACTGGTCAGTGGAAGGGACGTAGCAGTACTTCATGATGGGCACTTTCTTCTACTGAGAAATATCCAGGTGTCAGACACGGGTCACTATGTCTGTGTTGCTGCCAATGTGGCAGGGCTGTATGACAGAAAATATGATTTAAATGTTCATG
Seq A exon
GTGAGTATGCAAAACGTGGGGCACGTGTAACAGAAACAAAGCAGGCCTTTAAGTTCACCTGAGGATATCCAATAAATACTTGTGTATTCAAACATGGTGACTCTATTTATTGTAAGCTTTATACATAGCACACTTCAATCTGCAGGTGTATCACAAAAATTCATATCCAATTTTGTTGTTCCTGAACATTATAAAATCTTATTTCTGTCTCTGTTAATACCAATACCAATGCATCCCCCCAGCAGCTTCATCTCCCAAGAATAGAAAATCAGGATACAGTATAGTTTTGTGTGATGTTAGGTCCAATTTTGTGATAAGGAAGTGTTCTTTCGGATTCTGTTATAGGAGGAGAAGTTAGGGTTTAACCAAGAATGCCACATTTGTGGCCCCCACCAGAGGACAGTTATGTGAGCATAGCCCATATCTCAAGTTTCTAATCATCAGATTTTCTTGTTTTGTGCTATTGGAAGGATTTAAGATGGTACCTCCAACTATAATTCATTTTGGTAATTTGACTTAATTGGATTGATTAGAAAATCATGCCCCATTAGAGCCATTCTAACTGAGAATGGCGCTTCTTTTGCATATGATTTTTAGTGCTTCATTGAACACTGAATATTTGTGTTTAGAAAGGGTAGATCCAAGAAAGAAAGAGGCATTCAGGAGTTACTGTGCGAATGAACCAGGACAGCAATTTACAGGAATTTAGCTGCAGGTTCCTCTGCAAATCCCATCGTCTCACAGAGACTTCCAGTTTTATCTGTAAAGTAATTTTATGTCTGATATCTTGCACTGAAGTGGGAAAGCTTGTACAACAATCGGGAATGGTTTGGGAGAGTATAAAACACAGTATAGGATGAAAATAAACATATGAATTTATCATTATTGAAAACAAGAGGCCAAAGTGAATTACCCAAATAATTTTGTTTTACTTTATTTGCTGTACTGTATTATCAAAGTTCTGGACAGTAAAAAGAAACTTTAGATCTTCTCAGGCTGCTTAGTCTAGATGATGTTCAATTCTTAAGCCCAGGTTTTTTTGTTTTAACGAATGATCTACGGAACTGAAATTACTTTTACTCCTAGCAGAGAAAATCTAAAAACAAATTTGAGGTAGTTATTTTAGTAGAGGAATTGTTCTTTCCATTAGCAAAATAATTCTGTCAGTCTTAACATTAGTGTTTCATTAGTGTTAACATAGTGCTTCATTCAGTACTGGAAATCGTACTTAATGTATAATGGATAGGACTACTATAAATTGTTATTTGCTAGGGATCTTAAGGCATTAAATGAAGGTAGTGATACTCATGGAATTAAATTTTATTTTTTCCACATAGTTGCACAGAAAAAAATACTCATAAGTTTAACAGTTTTGTAGCTCCTCACTTGCCAAGCTTATCTTTATTTGGTTGTCAGAATATTTTGAGAGAAAAATTAACTTTCATTTGTTTTGGAGTGTGACTTTTCTTTCCTCTTTTTCCACAG
Seq C2 exon
TTCCCCCAGATATTGCTGGTGACCTTCAGTTGCCTGAGAACATCAGCACTGTGGAGAAGAATCCCATCTCTCTGGTTTGTGAGGCTTCAGGAATCCCCTTGCCATCAGTAATGTGGCTCAAGAATGGATGGCCTGTCACTTCCAACACCTCAGTGCAAATCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141:ENSGALT00000008254:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=89.5)
A:
NA
C2:
PF0767911=I-set=PU(56.5=84.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGCCAGCAGTAACATGG
R:
TGCACTGAGGTGTTGGAAGTG
Band lengths:
344-1829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]