GgaINT1000767 @ galGal4
Intron Retention
Description
NA
Coordinates
JH375182.1:326812-328148:+
Coord C1 exon
JH375182.1:326812-326973
Coord A exon
JH375182.1:326974-328034
Coord C2 exon
JH375182.1:328035-328148
Length
1061 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GACTTCTGCTTTTACTTCAGGTG
3' ss Score
9.22
Exon sequences
Seq C1 exon
TTCCTCCAAGTGTTGTTGGTGCTAATCCTGAGAATTTGACTGTCGTGGTGAATAATTTAATCTCTCTGACTTGTGAGGTCACTGGCTTTCCACCTCCTGATCTCAGCTGGCTCAAGAATGGAAAACCTGTCAGCTTGAATACTAACACTTTTATTGTGCCTG
Seq A exon
GTGAGGAGTCTCAACTATTTCTACAGCCTTTGGACTCAACTTCAGTCTGTTTTGTGTTGATAAGGGTGACAGCCATTTATGCAGCCAGTCTATTTTTAATATTGCTCCAGTGAGTAGACAAAGCACTTGACCTACTGTGTTTTTAAAGCATTTACTGATGTCTTGGCCATTGGATGGGCTCACTTCTAAAGAAAACCAGCTCAGACTGAAAGCACTGAAATAAACTGTGGGAAAAAGACTAGCAGGCAAGTCACATAACACAAGTCTTCTGAGATATTGATTGCAGTTGAGTCACTGACTCACCTTTCAAAGAAACAATCAGGAGTAGTGATGTGGGCTAGGATGAATTCTGCTGGCTTAGCTGACGAAGACTTAACAACTCTCCCATTGACTTCTATGGGAAATGGCGTTAACTGAACTCCCAGGAAGGAATCTTTGCATTCTGAGATCTCCTTACCCATTCAAAGCTCCTCATTCAGTGGGATTTCATGGTATCTGTGTCATTTTTGCTCCATATTTTGCTGTGTATCTTCTGCCCAGGATATCTCATGCAGATCACTTGTTGGGGTGCTCAGTCCTGTCCTGCAGATGTTATGTGGCTGGGGGTCTGCATTACACAGTAGACTGAAGTGCAGGTGTGGAAATTGCTTAATGGCAGTAGAGATACTGTGCAAATTAGTAATGTAGGCACAGACAGTAGTTTCATGGGTGGAGGCAATCGAGGCTTGGGGATAAAGGCTGGTGGGATAGTGACAGCAGCAGAGAAAAGGAGCATAGTTAAGTTAGCAGAAAGGGTTCAGCAGCCATAAAATAAACAGATCTAAATAGAGTATTAGTGGTTCAAATGTAAAAGCATCAGTGTAATCTGTCCTAAAATTTTATTATTTGACTTTTTAAATGGATTTACAAACCCCAGAAAGCAATGGCAATGTGGTGTGTTTTTGAATCCAAGGTTATTATAATGCCTGTGCTCAATCTGTTGGGGACACAATTCTAAGAAAGCACTTGAAACTGATACCATAACCACAGAATAAATCTCAGGACTTCTGCTTTTACTTCAG
Seq C2 exon
GTGCTCGGACTCTGCAGATTCCCCAAGCCAAACTGTCAGATGATGGTGAATATACTTGTATTGCAAGAAATCATGCTGGGGAAAGTCAGAAGAAGAGCTTCCTAACTGTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141:ENSGALT00000008254:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(58.0=92.7)
A:
NA
C2:
PF0767911=I-set=PD(40.9=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCAAGTGTTGTTGGTGC
R:
AGGACAGTTAGGAAGCTCTTCT
Band lengths:
273-1334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]