GgaINT1001034 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14129675-14134263:-
Coord C1 exon
chr5:14134174-14134263
Coord A exon
chr5:14129926-14134173
Coord C2 exon
chr5:14129675-14129925
Length
4248 bp
Sequences
Splice sites
5' ss Seq
GAAGCCACT
5' ss Score
-15.74
3' ss Seq
TATCCCATTCATTTTTTCACTTT
3' ss Score
-0.08
Exon sequences
Seq C1 exon
CTCAACGTACACTGCAGAACAGCTGAAGTCTGCTGAACTCCCGCCAAAATTCACAAAACTTAAAAACTGTTCTGCATCAGGCTCAGTGAA
Seq A exon
GCCACTTTTGCACACCTGAAATAAAAATTCACACAAAACAGCCATCATAAGCCAGAAAGCCAACAAATGTAGCCTGCATCCTGAGACACGAAGGACCATAGAATCGTTTGAGCTAGAAGGGACCCTTAGAGAACATCTGGTCCAACTCCCCTGCAATGAACAGGGACCTCTACACCAGATCCAGTGCTCAGTGCCCCGTCCAGCCTGACTTTAGGTGCCTCAGAACCCAGCCAGCATTGCACAGCTGTGGATACAGCAGCAGGATGACCATTTACCTCACAGTAAAATACACACACATGCTGTGACTAATCTGTGAGACTTTAAGGAAACTACAGAGAGACTTTTTCTCACACGTAACTTAGTCCCAGCTGCCATTAAATAACAAAGAACCAAGCCCCACACAACTCCCTGAATACCTATTTTTGCAGGGTTGAGAGGAAACAAGAAGGGATGAAACAAACATATTGGAATGTGTCACATTTGCCCATAACGGAAGAGTAATTTGTGAGAGAGAACAACCACATCCATCCACTACCTCCAGAGAGCTTCGTGCGTGCAAAGCACGACCATGGCTGCCGACAAACGGAGGTTGTCCCGTTCCCAGGGCTTATCCCGAAATCTGCTGAGCTCCAGAATCGTTCTCAAACAAGTACTGAGAAATATACAGCACATGAACCCCTTCCCGCCCGCAGCCGCGGGGTCCGCCATTTTACGGCCACAGCGCCGCCGAGCGGCGGGAAAGGGTTTCGCGCCTCTGTGTCTGAGAGCGGATCCGCCCGGGCAGCTGCTGCTCCCTCACAGGCATCGAGCCTGGCTAGGACCTCGGGCACGTTGTCTGCCTAAAAGGAACGTGTCACCATGCTGACCAGCGACTGTGCAGCCACTCCTCGTTGGTGTGAGCTAGCAGGCACGCTTTGCCTCAGCGCGTGTCTCTGGGACGGAGGGGTGGCACGCAACGCTGCGGCCGGGCCTCGTGCCGTGCATGCAGGGTGCCTGCAGCTCCAGGGGTGGCGAATCAGCGATCGTTCCTCTCCTCAGGAGAAAGGCAGCGAGGTATGCGCTGGCAGAGGTACTCCTACCTTGTTAGGAAACCTCTTCCGAGAGGATTTGTGTGTTGTGTCTGCCTTGTTTCTGTTGAGCCTTGGTCTTTTTTTTATTGTCCCTTTCTTTCCTTGGTTCCCCCTCCACAGCCCCCCCTCCCCCCCTCCCCCCTTTTTTTTTAAAAAAAAGGAATTTGGGGTGAAACCCATCCCCTCATTCAAGTGGGCACCACAAAGAAAAGCACAGCCTTCTCACAACAATGTGATGTAGCAGAAACTCAGCTGCTGTAACAGGGTTACTTAATACGTCAAACCTACAGGGAGGTTAAATGTAGTGGATAAAGAAGCACTGGTGGCAAAGCTGCTTTAATGTTACATTTTGCAGGCACCTGTGTGCCTTCACAGGTGCCCCGTGCAGCTGTCTGGTGCCCATTTCTGCTCCAATTCAGGGCAGTATAGGGAAGGCTCAGAGCCTGGTTCCTCTCAGTGTTCCTCTCCATAAGGCACGCTAAGCTGTGTTCTAACACTGCTGAGAATCTCATGTCTTGTACAAATTAACTCAGGCATTCTGACTGCAAAATTGGTGGCTATCAAGGTCAGTGGGTACCTTGCAAGGAATCAGCAGAGCATTTGGCATCTTAGTAAAACAGCGATTCTATCCTTTCTTATATTTCCGGAGGCTATGATTTTCCTGTTATTTGTTCTTCATTTTATTCTTAATATCATATTGTATCATGCAGCTCAATGCATATTTCAACACCTGTTATGTTGAAATACGTTGAAATAAACCACCATCTGGTCATATTGCATTCCCTATGTTACATGATATGGCAACTGACTGTTTCATTCATTTTAATGACACGTCTATGTTCTCTTAAAGTTTTTAAATAGATATTTTAAGCATATTATCTTTAAAAGTATATTTCAAAATAAAACCATATGCTTTCACTTTTCTGAAGAAGCTGAAACCATGTTTTTGGTCTCCTATAAAAATAGCTGGCTGCTTTCAGATCCACGTAGGAAGTTTCAAAGCTGTGCGTTTGATTTATTTATCTATCAGAAGTTACATAGTAGTTGTATCTTGTCAAAGTTAAGCTTCTGTACAATACAATGGCAAAAAGAGTGTTTTACATGATGCTACAGATCATTTTTCTCCTTTCTCCTAAAAATTTGTTTGTAATCTGGGATGTGACTCAGATATTTCAGCAGTGTTAGGCAATCTGCTTTGAGCTATACATACGTGAACTGTCGCATTAGGAATACATTTTGTGCTTAGTGCACAAGGATGCCAAAGGGAAAAGGATCTACAAGGAAAGAGTGCATATGTTGTTTCTAAATCAACAAGTTTCTTTCCTCCTACTTTCAATAATCACTCTGGATTTCCAGTAAAGCATACGTTTACACATTGCATGTAACGCACATATATGCAACAACCACGTAGACAAATTGTAAATGAGCAGTCAGCATTCTATCTGTAAATGCTTTGTGGCAATGCTCCTGTCTCTTGAGGGATTGTTTCCAGCAGAGGGGATTGGTCCCTCTGATACTAACACTGGGGGAACTGGGACAGTGGTAGTTGCTTATTTCACTGAAAGTTGTTTGACGTTATATTTCTTCAGGATCCTCCGTCTCTACCTATGCTTGTCATAGGCTGCTGTTAGCAGACATAGTGCTCTTTCTAACTGGAAAAGCTGCTTTGTCCTTGAGTTCTGCAAAGGTTGAGAGTCATCGTCATTTTAGCCCTGTTAATAGACCTATTCATTTTGACAAAGGCTTAGATATTTATCAGGCGTCACACAAACTGAATCCATACCGAGCAAACAGTTAGACAGAGGTTGCCATTGTGGATGACTTGTGTTACCTTCAGCCTTGTGCCTAAAAATGTCCTTGAGGTGTGGTCTTGGCTCAGCCTGAGCACAATGCACATGCTGACAGATCAGAGCCTTGTAAAACAATTGCTAGTAGCTAAAGTAAATCTTCATAAAAAATGTACTCTGTAATGAAACGGTCGCAATATAAGCAGTTTGGTAGCCATTTGAAGGGCATGGGAATACAGTACAAAAACTAGTTTTGCTTGAAATATTTCTGTAAAAATCTTGTAATACTTTGAGTAAAAGGGAATGAGTAGCAAGGGACGGATGAGTCTACTCTTTTCTCCCTCCCTGTTTTTTCCTTCTTTCCTACCCACCACTGAGTGATACCTTTTTCTATTTTCCAATTCCATGTCATTAAGAACATCCACTTTTGGAGGCTGCGGATTATTGATTCTTAGTTGCCAGCTCAGCAAGCTTCTTGAGAGTCTGTTAAACGCTGAACTCACCAATAGCTCTGTTGAAACAGTTGGGATTACTTCTGTCTGTAATGTCTGAATACACTTAATACCCAATTCCATTCCACATACTTATTCAAAAAGATAGTGTGGGAACGTATGCATTTCAGAATAAACTGAACGCTTGCTTTGGCATTAGTGTTACCCTAACAGCTAAGAATTCTACTCACACAGATCAGGATTTTCCTGTGGTAGGCACTATGCTCTGTGTCAGTTCTTTGAAACGCTGCCATACATGCTTTGCCAAACTGCATCAGAGTTTTATTTTGCTTACATCTCTCTTCTTTGTCCTATTATTATTTATCTATGTATTTACTAAGCCATGGTTGTACTTGTAGTAGAATGGCATATAATTATGTTCTGCTGTGCTGTCCAAACACAAAACTTGAGAATTCTTGGAGATAAAATGTAATATAAAGACACAGAAGAGAGGAGAGGAAAAACAGTAATAGGCATCTCAGGTTACATGTGCTATTTATGAAGCTTAAAGAAAGCAGCCAAATACCTGAAACTGAGATTTTGCTAGTTATTTCTATATCAGAGCAGCCCTTGCTCTGCTAGTTTTAGGACACTAGTCCCAGTGTTCATACAGTGGTTGTCAAACAGCTGAGAGATTAGAGCTGGCTAGAGATAGAAACTTTTCTTAAACTCCAGAAAGCAATGTCATTTAAAGGAGATGCTGAGATACAAGGATGTCCGCGCACCACCTCCAAGACAAATAAAATTCAATAGCATGACGTCCTTTCCATGGCTTGCCCAGAACAGCACAGAACACCAAGATGTTTAACTCCTTCTGTTACAAAGGCCAGTCAGTATCTTTAGTTGTGTTTAATGTATTTAGAGGTACAAATCTCTGTATTATCCCATTCATTTTTTCAC
Seq C2 exon
TTTCCCACAGTCATTCTCATCTTTCTCACTTACATATCCATACCCATCTATCTCTAGCAACTCTCTGCATCCTGTCTCCTCACCTATTCTTCCTAGACATTCTCCCTATATGTTTCCCCTGGTCCTTCCCTCTCTTCCTATCAGTGTTTCCAGTTTTCATCTCCCATTGTCTTCTGTAAGAAGTGATCACTCTTGTATCCCACTGCTAATGGCAGCAGCAGCAAAAGGCAAAGAGATAAGGAACAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.082
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]