GgaINT1001035 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14126469-14129925:-
Coord C1 exon
chr5:14129675-14129925
Coord A exon
chr5:14126502-14129674
Coord C2 exon
chr5:14126469-14126501
Length
3173 bp
Sequences
Splice sites
5' ss Seq
AAGATGAGT
5' ss Score
2.29
3' ss Seq
TGTCTGCAGCTAACAGTTAGGCA
3' ss Score
-7.09
Exon sequences
Seq C1 exon
TTTCCCACAGTCATTCTCATCTTTCTCACTTACATATCCATACCCATCTATCTCTAGCAACTCTCTGCATCCTGTCTCCTCACCTATTCTTCCTAGACATTCTCCCTATATGTTTCCCCTGGTCCTTCCCTCTCTTCCTATCAGTGTTTCCAGTTTTCATCTCCCATTGTCTTCTGTAAGAAGTGATCACTCTTGTATCCCACTGCTAATGGCAGCAGCAGCAAAAGGCAAAGAGATAAGGAACAGTGAAG
Seq A exon
ATGAGTCTCATCTGCTGGCTACAGTTGTCTACTACAAAATGCCTTGAAGAGAATGAAATGGCTCAGTCTTCAAGGTCTTCTAACTCAGATTTTGAGTCTTCTTAGTTTCCATATTGACTGTAACTATGATCTGTATCCCCTTTTAACTTAAAAGTAATAACAAATCAAACAAACAAACAACAACAAAAGAAAAAGCTATACAGGTGGTCAACCCAAAGGCATCACATTAGGATCCCCTCACTCACACAGTTTTGGAGTACAGGGGGGCATTCACCAGAATTAATCATTTTGTGCTTGCTCACTTCTTTCCTTGACATCCATTGTTGGCCACTGTCACAGATTTGGTATTGGGTTGGATAAACATTTCCTCTCATCTACTGTGGTTATTCTTATGGTAAATGAAGAGGGTGAAGTAGTTCTCACGATGAGTAAAACCAGCAACCACTTAGCTGCAGTCCTTACATTACTTTAGGGAAGAAAAAAAAGAAGGCCCAACATATTAGAAAACCAAACAAAGATGGTCTTAGCTATTTAACGGGAAGGTTTCCTAGTATCCAGTTTACTTTTCTACGGAATTATAGAAAGGTTAAGAGTTTGACTTGGCATTCAGTAAATGCTTTACCACACAATATAAGTATTAAGATCTCCTTGAGCTGAAAAAATAGCACCCTGGGATGACAACAGAAGTTACATGAACAACTTGAATTCTGATAAATTCTAATGAGGTAGTTCTTTGCTTTGCAAATGTAGTTGTCAAGATATCCTTTTTAAACAGAAGCAAGATCTTCCCAAATTCCCATATGCAGCAACACCTTGGCATGTTAAATAATACGTCAAGCAATTTGTTCTCTTGACTCGGTGTGAACAACTGCAGTATTTTCATCTTCCTGTTTCAAACATATCTGATGCGAGTAGATCATAAGTCTGTAAAATGTCGACTAAATGATTAAAAGGTTGACCAAGTTGTAGCAATTGGAAAGATGGTCTTAGCCTGGAAAAATGTTGTTTTACTTACATTTGACAGTGCTAAGGTAAATCTTCCATATGAAGGATACAGGAACAGATCAAAACTGGTCAGTTACACTCTAGCTAATGTATAACTAATCAGGAGTTCATATCAGTAGATGTGCAGACATTCAGGTTCAAGGAGTCTGCATAGGACTTAGGATAGGAAGCATTTTGTCTATTTAGTGTGCCAGTCTATAAAAGGATATGATCATTAGCAAAGTATACATAATTAAAGAATTAATAAAATTTGTGTAAGTTCCCATGAAAGTCTCTTCATGTGAGCCATGCATAATGTTCTGTATAGTTCCAATTCTTACCAAACTGGGAAAAGTAGAGGATATATAAGATCAATCACAGTAAATACAAATGTAAATTCTTACGTTTTAGCAAACAATCATAATTTAAGAGAGGTACTAATTTTTACAGATCTTTGTCATCACTTTAATTATCTGGATCTCTGAAACACAGAAAAGATACCTAAACACAGTTATTTTCCCAAAGTATTCTTTGCTAAATCAATTTAGAACATGTTCCTGCCTCAGCCCGCAGGAACAGCTTTTCCGTATAAGGTTTCAGAGTCCGTTGAATGAAAAAAGGTCTGAGGACAATGATTTTCAAGATAAATTTTAGTTCAAAACTGACTGAATTATATGTATAAACGTTCTTACATTCTTTTGTCTTTACAAGCAAATATTAGTTAAATTAGTGACTGATTAGCAGATACGCCCAAAAGAACAACTGTGAAAGCTTCCTGACACTCCATTGTATTCTCCTTGGTTTTGAAATATAACACACAAAATATTCTTCTCCATTCAGAAGTTTATATGGTTTTGATCTACAGATACTCTAGCAAATAATTCTAGAACCAGGTGTCTTCCTGGGGGAAGCTAATGCCTCTGACGTACAGAATGAGCTCGTTCAATTCTTTCATTAGTGGTCCAACTGAAAACTCTTTCCCAAAGCCCTGTTGTACTTGTCTTGTTGTGTACAGGATGTTGTTTCTGTTCAGAGCAAAATAGCACAAAACAGAAAACCCTCTGGATTATCCAGTGTATTTATACTGCACGCACTGTGGTTGAGACCACCATAGTCTTCTCAGTTAAGGTATGTCTTGTGTTAACCTAACAATACATTTTCTTATGTACAAGAGTCCCAAAAGATCCCTCAAAGTTGATATGATTATGTTCAAGCTGAATGCAAGAGCTAATATATTTTTATGTATTTTCTGATAACATATATTTCAACATCAAGATTCTTACTGTGAATTGCATCCCTCATGCTCAGACATAGGCATGACTATCCAGCATTTGCTTGCTGAGAATCTCACATGGGTTGCAAGTGGTTTCAAATGCAGTCCAACTGCTTTATCTATGCCATCAACAGATGGATTGGGAGAGTTGTGCAGGTTGTTTAAAGCATTCATCTCGATCCTAAGCACTGGACATATTAATTTAAATACAACAATTTGAATATATTGATTAATAATTAATTAGCTCAACATGTGCAATGAACGACGTCATCGTAGGATGACAAGGGTAAGGGATGCCCTAAGAAACACATAACAAAAATACAGATATTCTCCTTTTTTCGGTTTGATGGGAAATTTCAAGGACTTTTACGTGTGATGCTATTAATAAGCTACTTTAAATATTTACTGGTGTGAAAAAAAATAGAGTTAACAGGTTTTGAGTAATTCCTCAAGCTACAGTAAGCTGCAGCTGGGAACTGTTGTAATCAGAGTTGGAATATGTATCTTTATGGAACACAACAGTATTTCTGCTTCTCCAATTCCTTTCCCAGTTTTTCCAGTTCTCTTATACCCGTATTATACTCCTCTCCACATTTCTCTTTCTGAAGGATAGGACAGGTTTCTGCAACCAGAAACAGTCAGTGCTTGAGGGGATAAGTAACTGCCTCCAGGAGTGCATGGCAGGCTTACATCCAAGGATCTTTGTTCTATGAGAGGTCAGAAAGTATGACATACATTTGTATGGAGGGATTTATGCTGCAATAGACAGTGAGTTTTGGAGTACTGACAGCAGTGCTGCAAGTAGTAAGGGTTGAGTTGGAAAGGAGGTTGGAAGGCTATTTGGTAGGACAGGGGATGAACGCAAACAACTTAGAGCTGGTGAGGAGGTTGTATGCTGTCTGCAGCTAACAGTTAG
Seq C2 exon
GCACAGGAGTGAGGACAGCTGTGGAGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]