GgaINT1001050 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14096137-14096676:-
Coord C1 exon
chr5:14096627-14096676
Coord A exon
chr5:14096164-14096626
Coord C2 exon
chr5:14096137-14096163
Length
463 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
CCAGTCTGATCATCTTTAATAGC
3' ss Score
-4.34
Exon sequences
Seq C1 exon
TGAAATCACAACTACCCCATTTACATTTTCTACCAGTCAACCTGCAACAG
Seq A exon
GTATGCATGAATACTCTTCAAAATAACTGAAAAATCTCTGGAAGGAATTGAAAATTGCCTGAAGGGGGGGAGGGGCCATCAGCACATACTTTTATTTGAAACTGTTGACTTCTGAAGCAACTAACTCAATTGGCAGCTTCAGACACTTAAAAAAAAATAAATTAAAAATAAATCAAAAATGTAGAAAATACAGAATTTCTCCTAAAGTCAGTCTCCACTACTTTACTGTGTTTTTTTTTCCAGTGGAAAAATGATTAAACTTACTAGCCTTTGCTCTTTTCAGAATCTCACTTCCCTGCAAGTAAAAAACAGCAATTCTAGGCCAACAAAAAAGACAATTACTGACATTTCAAAAACTACAGACCATATTAGCATAAACAGAAGATAAGAAAATCATTTTGAGGAATTGCTTAAATTATATTAAACCAATTTTTGGAATCTTTCCAGTCTGATCATCTTTAAT
Seq C2 exon
AGCCTGAACATCTACATTATTCCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]