GgaINT1001080 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14338714-14339066:-
Coord C1 exon
chr5:14338827-14339066
Coord A exon
chr5:14338764-14338826
Coord C2 exon
chr5:14338714-14338763
Length
63 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CCTGCTGATTCTTTGTTTAATGA
3' ss Score
-2.09
Exon sequences
Seq C1 exon
GTCCCACTCCTGAGAGCACAACACGTACGACTGTGTCAAGTAGCAGTGCCCCGCCAACACCAACTGGATCTAGCCCCACTACCACCTCTGGCACGACGCCCTCCAGCAGCACCATCGGCAGCACCGTGAGCACCACGCCTGTTACCAGCCCGCCCTCACCCAGCCCGACTTCAGTCACCACATCCACACCCGGGCCAACACCCACCACCTCTGTAACACCTCCACCAACGACAACTGAAG
Seq A exon
GTAATGTCTGGTCCTCGCATTATGTGTCTCCTTGTTGACTTTCCCTGCTGATTCTTTGTTTAA
Seq C2 exon
TGAACATGTGCCCTAAGCTAGTTCTCATGCTTTCTGTTTTGCCATGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCACCACGCCTGTTAC
R:
GCATGAGAACTAGCTTAGGGCA
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]