GgaINT1001084 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14336380-14336871:-
Coord C1 exon
chr5:14336829-14336871
Coord A exon
chr5:14336647-14336828
Coord C2 exon
chr5:14336380-14336646
Length
182 bp
Sequences
Splice sites
5' ss Seq
GTAGTATTT
5' ss Score
-4.74
3' ss Seq
ATTTGCAATTTGTTTTCCTGCAA
3' ss Score
-0.43
Exon sequences
Seq C1 exon
NCAGTGCACGTGGTGGTTAGGTGCAACAGAGTTTACAGCTGTA
Seq A exon
GTATTTACATCTGTCTGCCATGCGTGTTTTCGGAATCCTAGCCATTTCATACCTGAATGACAGGATTACTACTAATGAGACGTTCTGCTTTCGTACTCTCTTCACTTTGACTTCTGGCTGTGGAGTATGATGAACTCAGTAGAAAATAAGGAAGGAATGCAGATTTGCAATTTGTTTTCCTG
Seq C2 exon
CAATGACAAATCCCTGTGTTATCCCAGGTCCCACTCCTGAGAGCACAACACGTACGACTGTGTCAAGTAGCAGTGCCCCGCCAACACCAACTGGATCTAGCCCCACTACCACCTCTGGCACGACGCCCTCCAGCAGCACCATCGGCAGCACCGTGAGCACCACGCCTGTTACCAGCCCGCCCTCACCCAGCCCGACTTCAGTCAGCACATCCACACCCGGGCCAACACCCACCACCTCCGTAACACGTCCTCCCACGTCGACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.911
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTTAGGTGCAACAGA
R:
GGTGTGGATGTGCTGACTGAA
Band lengths:
251-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]