GgaINT1001091 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14359318-14360537:-
Coord C1 exon
chr5:14360427-14360537
Coord A exon
chr5:14359388-14360426
Coord C2 exon
chr5:14359318-14359387
Length
1039 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TCCTGTTTCCTTTTATACAGGTG
3' ss Score
10.22
Exon sequences
Seq C1 exon
AGTGCTGTGAATGATACTCATGCCCTCCTGGCAGAGCTGGCTCCTTGTGGCTCCTCAGATGGACAGACCTGTTTGAAGACTGTTGTGTTGTTAGTAGATGACAAAAAAAAT
Seq A exon
GTAAGTGTTGTTTGGGTTCTGCTGGGTGTTTTGAAAATTAGCATACATCCCACACTGTTCCAGAGTCATCCAAAGAGGGTGGATAACAGATCTCAGAAAGGCTGATAAAAAACTAAAGCTTCTACCTCAAGAATTCAAAATAGACCTCAGCTGAGCAAATGCTGAAATTCAAATAAGCTAACATTTTTCCCTTTCTCTGCTCTCTGCCATGTCTCACCATCTTCCAGACTGGTGAGAAAAAAGAGTACCATCCTTCCTCCCCTCACGGTATTTTACTTTTCTTCAGCTTGATTTCATAGATCTAATTGAGTCTTTTTCAGAAGACATCCAAACTTTGAATGTTCATACAATCCAACCTTCTTGTATATTTGTATTTAATTCAATAATAATGTAAATGAGATGGGAAATCTTCAGTGCTGTTCTGCATTTCTGATTCATATTTATGTAAAGTCATCTTATTTACTTAAGTATTATGTTTGGTGATGGGAATACCTATACTATGTTTATACATAATTTTACATATGTAAACATGATTTTTCTCCCATGTTTCAGCTCTTCTATGGCCTTGCCAGCAAAATAAAAATATCAACCCAAATCAGAAAAGCATTTTTTTTGTTCCTGTGTGTACAAACTAGCATTTTATGAGGGAGCTTAACAAATTGCTTCCTTACTATGACAAAATCATACTAATCATTATGTTTACCATTACCATTGCTCTTATAGGAAACCAGAACTATCTATATATCCTGAAGTCCCAGTATTTTCTTCTACTTGTATAACCAGTGTTTAATAAAAGACAATTCATTTTACTACTTGCTATATACTGTTGTAGACAGATCTAATCAAAAACTTAATAGGAAGACTAAGCCCACTGCCACATTCAGTTTTAAGATAGATTTTTCCTTTCATAGATTTTAAGTTCTAGTCACAGTCTAAATATGAAAAATGTTCTCTTCTCTCTCTGCTCTTAAAGTTATTTTTCTATCAATTTCTGTTCTCACTATCTGGAACCTCATCAATCCTGTTTCCTTTTATACAG
Seq C2 exon
GTGGTGGTTTTCAGATCAGATGGCAGTGTGTCACTGAATGAGATGACAGTGAATGTGCCTCATGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(23.4=100)
A:
NA
C2:
PF0009420=VWD=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]