GgaINT1001100 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NDV6]
Coordinates
chr5:15427803-15428419:-
Coord C1 exon
chr5:15428346-15428419
Coord A exon
chr5:15427889-15428345
Coord C2 exon
chr5:15427803-15427888
Length
457 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
GACCTTCCTTCTGCTTTCAGGGC
3' ss Score
11.88
Exon sequences
Seq C1 exon
CTTCTGACATGAAGAAAGATATAGACACTTTAATAACCCAGGAAAAAGCGGAGATCATTGCCAAGTATGAGAAG
Seq A exon
GTACCTGCCTTGAGTTTTTCCCCAACACATCAGCTAAGGCTGGAGATATTTGGTCGACGGGTCAAGCAAGGATGCTTTGAAGGACTGCTGCAGCAGCTGAGCTCTTTCTGCCTGCTTCTGCCTGCCCATCCTCTCTCACAGTCTCTTGGATCCTACATATGCTCTGTACAGTCATGGAGGCCCTGCTAAAGCCAGGATGGCTCATGCCAAACAGCACTGCCTGCTGTGATGTACAACCCTTCCCAGCCCATAGCAGTGACACCTCAGATAAGCTGGATGGTTTCAACCTGTAGAATTTTCCGTTGATTGTGGTGCATTTTTTCTCTGTAGAGTAGGTTTTGATCTGTAGTGCTGTTGCTATGTGCTTTCTAGCATGCAGGCACTGGGGGGAACAGGATGCGGGCACTGAGCTATTTCCATTCCTGATGTGGCTCATTGACCTTCCTTCTGCTTTCAG
Seq C2 exon
GGCAGGCAGGAGGGAGCCACGATTGACCCATGGGAAGATGCTGATTTCACACTGTACAAAGTTACTGACCGCTTTGGGTTTCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006897:ENSGALT00000020386:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]