GgaINT1001355 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:614476-616110:-
Coord C1 exon
chrLGE64:615802-616110
Coord A exon
chrLGE64:614806-615801
Coord C2 exon
chrLGE64:614476-614805
Length
996 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
ATCCCAGATTGTGTTTTCAGTGA
3' ss Score
4.49
Exon sequences
Seq C1 exon
CTGATGTACGGCTGGTGAATGGTCCCAGCCGCTGTGCCGGGAGAGTGGAGGTCCTGCACAACGGGCAGTGGGGGACGGTGTGCGATGATGGCTGGGACCTGAATGATGCCAAGGTGGTGTGCAGGCAGCTGGGCTGTGGAACAGTGCTGTCGGCCCCAGTCAGGGCTTACTTTGGGCAAGGCACTGGGGACATCTGGCTGGATGATGTGAGCTGCACTGGGATCGAGGATGCACTCCCGCATTGCCAAGCCCGTCCATGGGGACAGCATAACTGCAACCATAGAGAAGATGCTGGTGTGGTCTGCTTAG
Seq A exon
GTAAGTTCTGCAACACATGGCATTGCAGCGGCCAGCACTGTGTTCGAGGATCTTGGAGCTCATAGAAGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATCTTTATATATAAGGAAGACATTTTTCATTATGGGAGTGGTGAGGCACTGGAACAGGTTGCCCAGAGAAGCTGTGGATGCCCTATCCCTGGGAGTGTTTAAAGTCAGTTTGGATAGGGCTTTGAGCAACTTGCTCTAGTGAGACATGTTCCTGTTTATGGCAAGGATGTTGGATTAGGTGACGTTTGAGGGTCCCTTCCAACCCCAAACATTCAGTGATTCTATGATTTCATAATTCTATGACTATGAATCATGGTTCTACAATTCTTATGGTTCTATGATTCTTATGGTTCTATGCTTCTACGATTCTATGATGTTTATGGTTCTATGATTCTTATGGTTCTGTGATTCTATGATTCTTATGGTTCTATGATTCTTATGGCTCTGTTATTCTTATGGTTCTATGATTCTTATGGTTCTATGGTTCTATGATTCTTATGGCTCTGTGATTCTTATGGTTCTGTGATTCTATGATTCTTATGGTTTTATGGTTCTTAAGGTTCTATGATTCTTATGGTTCTATGATTCTTATGATTCTGTGATTCCTATGGTTCTATGAGACTATGATCCCATGATTCTACAGTTCTATTATCCAATGACAATCACTGTGCCCAACATCGTGACTAACTCCAAACCTGGGTTGTAATGAACCCCAAGCCCAACATCTTTGCCCCTGGATGGATCCATCTTAAAGGATGGGGCCTATTATTCCAGCTGAGCATCACAGGTTGCACCCCAGAGATAGCTGCCTGGACTGTCCTGTGTACATCCATGGAGTGCACTGCACAGCAAGTTCACTTTTCCCTACATGAAAAGACAAAGATAGGAATCAGGGAGGTAGGGACAGTCATGAATTTCTCCATGGGCTTATCCCAGATTGTGTTTTCAG
Seq C2 exon
TGACAGACACCTCAAAACCCAACTTCCTGCGGCTAGTGAGTGGCCCCAACCGCTGTGCTGGCAGAGTGGAGGTGCTGCATGATGGGCAGTGGGGCACAGTGTGCGATGATGGCTGGAACCTCCAGGCTGCCACTGTGGTGTGTCGGCAGCTGAACTGCGGCAGGGCTGAGTCAGCCCCCAGCGGTGCTCGCTTTGGGCAAGGCACTGGGCGTATCTGGCTGGATGACGTGAACTGTGCTGGGACTGAGGATGCCCTTCACCAGTGTCGAGCCCGTCCATGGGGACTGCATAACTGCAACCACAGAGAAGATGCTGGCGTGGTTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103:ENSGALT00000014816:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
NA
C2:
PF0053013=SRCR=WD(100=88.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGGATGATGTGAGCTG
R:
CAGCACAGTTCACGTCATCCA
Band lengths:
356-1352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]