GgaINT1001357 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:612929-614280:-
Coord C1 exon
chrLGE64:613963-614280
Coord A exon
chrLGE64:613247-613962
Coord C2 exon
chrLGE64:612929-613246
Length
716 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACATTTTGCAGCGTTGTCAGATG
3' ss Score
-1.31
Exon sequences
Seq C1 exon
AGATTACAGCCAAAGTGCGGCTGGTGGATGGTCCACACCGCTGTGCCGGGAGGTTGGAGGTGTTTCAGAACGAGAGATGGGGGACCGTGTGTGGCAACGGCTGGGACATGAATGACGCCATAGTGGTGTGCCGGCAGCTGGGCTGTGGCATTGCTCTCTCGGCTCCTGTCCAGGCTCACTTCGGCCAAGGGTCAGATCCCATCTGGATGAACAGAGTGTCCTGCATCGGGACAGAAAGTTCCATTTCAGAATGCTTGTCGTCTCCATGGGGAATCCAACTGTGCACCCACATGGATGATGCCGGTGTGGAATGCTCAG
Seq A exon
GTGAGCTATGGATGCCACATTGTTGGAGACAGGTTGATATGTGACATGCCTGGGGAGGACTAGAGTAGGATGGTGCAAGAAAAGTACAGTTCCGTGACAGTGAGAAGAGCTTTTTTTCCATTCTGATACCCATAATAATATAAATAAAGTAAAGAGAGAGTGTCTTAAAGTGAACTCCCTCTCTAAGTGAAACTTGCATACCCTACAAGGCAGCAGAATCTCAAAGGGCACTGAATCACAGAATCACAAATAATGGTTGAGGTTGGAAGAGACCTCTGGAAGTTATCTGGTTCAACCTGACCACTCAAGTACGTCCACTCAGAGTAGGTTGCCCATGTTCATGGAGCTTTTCATGGAATCATAGAATCATAGAATTGCTTGAGTTGGAAGGGATGTTATAGACCATCCATTCCAAACCTCTACCATGGGTAGGGTTGCCATCAGGTTGTCCAGGGCCCTGTACAACCTGGCCTTGAACTCCTCAAGGGATGGAGCATCCACAAACACTCTGGGCAACATGTTCCAGAGCTCAGCCACCTGAATGATTCAAAAGGATCATCCTTTAAACATGAAGGAGTCTGCATGCTACAAACAGGTGGACACCTCACTCCTGCAGATGCTGAGGCACATGGTGGTCAAGCTCTCCCTTGGATGTCTTTCCCCACTTCACTAGTGCTGATGTATGGTCTCCCCACCACATTTTGCAGCGTTGTCAG
Seq C2 exon
ATGACACATCAACTCTTCGCCTGGTGAATGGCCCACATCGCTGTTCTGGTAGAGTCGAGGTGTTTCACAATCAGCAATGGGGAACTGTCTGCGATGATGGCTGGGACATGAATGATGCCATGGTGGTGTGCAACCAGTTGGGCTGTGGGGAAGCACTGTCAGCCACAACACAAGCTTCATTTGGTCGAGGGGCGGATCCCATCTGGCTGGACAGAGTTGCTTGCACTGGGAGAGAAAACACTCTCATACAGTGCAGGGCCAGACCCTGGGGAGTCAACGTCTGCACACATGAAGAAGATGCTGGTGTTGTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103:ENSGALT00000014816:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.6)
A:
NA
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAACGAGAGATGGGGGAC
R:
CAGCCATCATCGCAGACAGTT
Band lengths:
357-1073
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]