GgaINT1001366 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24076200-24077265:+
Coord C1 exon
chr1:24076200-24076504
Coord A exon
chr1:24076505-24077213
Coord C2 exon
chr1:24077214-24077265
Length
709 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTTTGGTCAATGTCTTTTAGGAA
3' ss Score
8.37
Exon sequences
Seq C1 exon
ACTCTGAAATGACAGACTTGAAAAAAGAGATACCTCAGCCTCTCTCAAATAGTGGTGATCTTCAGGAGGAGAAGTTAAGTTTCAGTGATGGCTTCAAGAGTAGTAGTGGTTCTTGGTCAGCAGCAGAAAACATAAAGCTTGAAAATCAAAGACCAAGCTCTGTCACGGATGATGAAGATACTGAAGAAGGGCAGTATAAAGAAGTAGATAATAAAGTCCATGAAGCACTGAAACAAGAAGGTGAAAACCTGTGCCTAAATAGATGTGAGGAAAATCTAAGGGCAACATTTTCCTCAAGCACAAAA
Seq A exon
GTAAGTATAAAGGGATGAGTGAATTGCAAGGGTTTGTTAAGGGTGATGCAGGTAAGCAACAGTAAACTGTATTCCTGTTAATAGTTACCACTCATCCATATTTCAGTCATCGTATTTTGATACCAAAAATATCTTACTCATAGCCAAAGTCATTTCTTATGTATAAGAGTAGTCTCAGACATTATTTTCAATATGTTTAGTATGTGATTGCAGTGTTTTTGAAGGAGAAAGACAGGAAACTTCATTCTTTCTGGAATCTGTGGACTTTCTGTTATATAAAACTGAGAGAATGAATAATGTCTGTTTAAAGTTGCTGCCATTTAGTAGAATTCATGGGGTGATGACTGCAACTGAGGAAGCAAAAGGAAGTTTTGAATGAAATTGAGGGCAGGAAGCTAGTGAAATTGTGAGCTAAGTAGGCAGAAAGAAGGAATGACTTCCTGAATAGTATAAATGAAACTGGAAGTAGGCTGCCACAAGGAAGTGCTTCTCAGGAGCTTTGCATAACCAGGGATGAAGTTTACAACATGAGGCATTGCTGTTTAAACATGCAGATTCCCACTGAAAAATTGAAGGCCTTTAGAAACCTTGTTGCGCTAAAATGAAGATTCTAGTCTTACTCATGAAAAGTGTTTTCCAAGTTGTTCATGGGTGGTGAAGTAGATACTGGTTTCTGCTCTTTCCAGCTCTTTTGGTCAATGTCTTTTAG
Seq C2 exon
GAAGAGTCACCTAAATGGGAAGAAGAGGAAGAACAGGAGAAGGAAGATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.873 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGAAATGACAGACTTGAAAAA
R:
TCCTGTTCTTCCTCTTCTTCCCA
Band lengths:
343-1052
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]