GgaINT1001431 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C1A5]
Coordinates
chr6:30902011-30909486:+
Coord C1 exon
chr6:30902011-30902328
Coord A exon
chr6:30902329-30909158
Coord C2 exon
chr6:30909159-30909486
Length
6830 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
ATGGTGCTCTTTCTCCCCAGCAG
3' ss Score
8.56
Exon sequences
Seq C1 exon
ATACACCGCCACAATTGCGACTGGCATCCGGTGAGGACAGATGTGCTGGAAGGGTTGAAGTTTACCACAACAACGAGTGGGGGACGGTCTGTGATGATTCCTTTGATATGAACAGTGCCAGTGTTGCATGCAGGCAACTCAACTGCGGCCAAGTTGTTTCTGTCCTGGGATGGGCTTACTTTGGCCCTGGAGAAGGAAACATCCTTCTGGATGATGTGAAGTGTGCAGGAACCGAATCTCACATTTGGGACTGCCCGCACGCCGGCTGGAACAGAAGTGACTGTGGGCACAATGAGGATGTCAGCGTCATCTGCTCAG
Seq A exon
GTAAATAAAATTCTGTGCTGTTACAATGTATTTGGATTTTACCCTTGACCATAAAAGCGAGAAACATCAGGGTGGGATTTGGAAATCAGACAAGAGCTGAGCTGTGTATGTGCAGAGGCTCCTTGTGTTTGGGGTGAACCAAGTGAGCAAGGAACACAAAAATGTCATGTGCTAAATATCAAAACTGGCAGCCACAGGCACTGAGTACGAATATGGGGAGAAGAAGGTCATTTGAGACCACCTCAGTCAGCATCTGATTCACAGAATCATAGAATGGTTTGAGTTGGAAGGGACCTTTAAGATCACCTCATTTCAACCCCCTGCTATGGGCAAGGACACCTCTCACTAGCCCAGGTTGCTCACAGCCCCATCCAGCCTGGCCTTGAATACTTCCAGGGAAGGGGACACCCACAGCCTCACTGGGCAACCTGTTCCAGTGTCTCACGACCCTCATAGTAAAGAATTTCCTCCTAATATCAATCTAAATCTACCCTCTTCCAATTTAAAACCATTTCCCCTCATCCTGTTGCTGATTCCAGACTTGCCCAGATAAGCCAGGCAACAAGTTCAGAGCAGATAGAAGCGCATCCAGCAGGTCTGAACTATAACAAGTCTGAATTGAAAATAACTATTAACACTTCCGTCCTAGATGTCAATGAAAGCAATGATCACGTAGCTTGAAGACACCTATTTTGAAGCAATTTGAGTAACGCCACAGCTAATGTCAATTTTTGCTTTGCTCTGTGCAGATGCAGTGCAGTCCACAATTGCGCCAACAGGTAAGGCAGTCAGAAATAACATCTGGATCTACTGCCATTAGATGTTAAATCAAGGTGAACATCTCTTTTCAGTAAGAACAGAGGGCTATGCATTCACTCACTTCCCTTCAAAGCGCATACCCACCTACTTACATCAAGATTTCTCTTCACACATTCACTCCTAACTGCTGCCATTCTCTCCTTCTCTTTGTTCCCCCAACTTGCTGGTGCCCCCAGAGCCACCTTCTACATCCACTGTTGTCTCAGAGGAAAGTGCCACATCACCTACTGAAATCCCAGGCACAACTTATGAAGGTAAGAGCAGCTGTTTTGCAAGCTCTCTCTAAGACTAATACTCTTAATTGGGGGTCTAATATTGTTAACTGGGGGTTTGGGGCTGGATTAAGAAGATGTGGCTGTGTGAATCTATGGAATATTCACAGCAGACAACAACAAACTGAGCATTTGTGGGAAGGAACAAGGCCCTCTGTGACATCTTCACTTAAAAAAGGCTGTTGGAATGTATCAGCAATATATCCATTTAATGATGGATGTCTCTGAGTCTGTAGCTGTAGTATTATACGTGAACTTTGTTGAAGTGGAGGTGTCCAGATAGTTGTGATTTGGTGTGTCCAAGATTCATGACAGCTTCAGGACCATTAAGGAGCATCAGGCATCTGAGCTCAGCTTCCTCAGTTTGATTTCTGTCTCTCCAGTAATTTAGCAGACTGATTACACAGCTGTTTATCAAGCCTGAGATCTAAAGTGAGCTCCTAATTCCTCAAAACACATCTGCTTTTAATTGCTGTTGGCAGACATTTAATTTCTCACCCTGAGAACCTCTTCTGTTTGCTCAGGTTCCACCTTCACTACAGAGGAAGATAGGACACCAGAAATCACTACTGTGATACATGAAGGTAAAGGGCATTGGCACAACACAGCATGTAAGAAAAATGCTGTATTTATATATGTGGGTATAAGTTTTGGTTGGAGAAGGGGATCAATGGGATGCGCCAAAAAATGGGGCAAAACCACCACCCCTCACTGTAACCAACGCAAATGAAATGAATTGAATCTGCTTGGTGCCAACCTGCTGGCTTTCTGGGAGCATGGGTGGGCTGCCAGCAGCACCGTGCTGGGAAGCAACCTACTGACCACTGTCAATGCCAAATTACAACACTCACTGCTAGTTTTGCTTCTCACACTCCTTTTGCTTTTCTCATCATCTTGAGAGAAGTCTGAAATTTTCCTGATGCTTGTAATGCAATGATATGGAAGACTCATTTCTGAGCACTGATAGTGGATATGGATGGCAGGGAATACATGGATTCCCTTTTCCACAAAGCTTGAAGCCAATTCAATGCATCGAGAACTGAGTTCCCCCTTACTGTCCTACCTGGATGCTGTCATGTTTCCTTATGTTTTGTTTCTTGTCGCAGTCTCTGAAAGCTCAACAGAACCAACATCATCCATCCCACTTGTAGAAGACAGTGTGACCTCAGCTCCTGAAATCCCTTCCACAGCTTCTGAAGGTAAAACCTGTGCACAAAACCTTTGACACCTCCTTCGCATCCAGTTCAGGTGATATTGTCTACTAACCTGTTTCCTCTCCCCTGACCCTTTCTGTAGCTCCCTCCTCTGCCCCCAGCACTGCAGCCACGCAGCCAACAACTGTTCCAGGGACCCTGACCACCCCTGTGGAAGGTGAGGCACTCCTCTGCTGAAGGTACTCCCAAACACAACAAGGATCACATCCCTCACTGCCCCTAACAATGGCCACTGTGTCTCTACCAATCACTACTGCATCTCCAGCAGTAGAAGAAGGCAGGCAGAAATAACACCTGGATCTACTGCCATTAGATGTTAAATCAAGGTGAACATCTCTTTTCAGTAAGAACAGAGGGCTATGCATTCACTCACTTCCCTGCAATTTACTCACTTCCCTGCCCATACCCACCTACTTACATCAAGATTTCTCTTCACACATTCACTCCTAACTGCTGCCATTCTCTCCTTCTCTTTGTTCCCCCAACTTGCTGGTGCCCCCAGAGCCACCTTCTACATCCACTGTTGTCTCAGAGGAAAGCGCCACATCACCTACTGAAATCCCAGGCACAACTTATGAAGGTAAGAGCAGCTGTTTTGCAAGCTCTCTCTAAGACTAATACTCTTAATTGGGGGTTTGGGGCTGGAAGAAGATGTGGCTATGTGAATCTATGGAATATTCACAGCAGACAACAACAAATTGAGCATTTGTGTGAAGGAACAAGGCCCTCTGTAACACCTCCACTTAAAAAAGGCTGTTGGGATGTATCAGCAATACATCCATTTAATGAAGAGTATCCCCAGTCTTGTAGTTATGAATACTGCACATACATTCTGATGAGCTATTACTGTATGTTTTTATTTTAGCCAAAATAATTAGCTTTGGTTCTTATTCACGTTTGTACGTTGTTTTTCATTATTCCTACTGTTTTCCTCCCCCAAAGATTCAACCAGAGATTCTGTCACAGAAATGGATATACTGGTCACATCAACAGCAGTCACAGAGAGCAGTGAGCCCGTAACAACCCCAGCACCATCCTCCACACTGAGCAAAAGTAAGTAACTATCAGATACAAGCTGTGTGCCTTGCACTGTGCAGGAGCAAAAATTCTCTGCCCTGCATCACCACATCAGGCCCCTTCTGTGGCTCAGGAAATTCCTGAGATGCAGAAAAATTCAGGTAGGTGACAATCCTGTACAAACAAGGAATGCTTGTCCCACCCATACTCTCCTCCTGAGCACCTGTTAGTGGTCTCTGTTGGGGATGGGAAGGTAACTTAGACAGGGCTTTGGTCTAACTCATCTCAAGTGCTGATCACAGTGCAATGTGTGTGCCTATGTCCCACATTTTCCCCATTCTCTTTGTTGGGGCAGCTCTTATTCTGGTGTCCATTTTGTAAGGAACTCTGCAGTTTTTAATGAGTGAGTGGGCTTAATGAGTCTATGAAATAATTTCTTAAGTTTCCTAAATCTCAGAAGCATAGTTTCACCAGACAGTGCCATTTTGCATTGGCCATCAGCCAAGACAACTCATGGCCATCCAACCAGGACACAGTCTTCTTTTAGAGTCATCTTCAGGCTATTGAAACTCTTCCCACAACTCTTTAAACCATTCCTCAGAGCTCATGATTTTCAAGCCCATCGCATTTCTCGCGTCATTCATCCCAGCTCTCCTCATTATCTCTACCTTTATTAAATATAAATCAACCAAGAAGCTGAGGCCTCTTTAGTGCCGAGAAGAATAAGCAGCTCCTATGTATCACTCTGTTCACACCGAGGTTGGACTGGCTCACTGCGGTGCCAATGTTATTGGCTTCCAGTTTTTCCACCGTCCTTCTGTGCCAGCTGAAAGGATGATTTACCCTCTGTGCCTTGGTTTTCTCTTTCCACCGAGCATCCCATCGCACCTGTCGATGTACAAGTTCAACTTGCTGATTTTTGACATCCATTCTGCCCATTTTGAATTCTCATTTTGTCCTCCAGAGAGCGCACAGGTCTTGCGTTTCCTTCTGTCACTCTATCTGTCCTGTTCCAAAGCATGTCGGAGGTAATGGCTGAGGGTTTCATTACAGTACAGTAGTGGTGGCTGGCTATCTAACACCCGTGCCATCTGTTAGGTCAAGATGCTGCAGAACATGGTAAACAATTACCAAGGCAACTGATATTTCTTCTCTTTGTAACCTTTTCTAAATCTGCTCTTCTTCGACAGCTTTATCTATGTTGTCGGAAGTTCAGAGCTGTGACTCCATACCAATGGCAGCAGTTGTAGGAAAGGTGGTATAACTTGCTTCCTGTTCCACACATTAACCTGATTTTGAGCAATATGTTCATATTTGAGTTCTAGGATCCACCCACCCTGGTTTCTGCAAATGTTAATTGTCTTAGAAATTAACAGACCAGTGTTCAGCACAGCAAAGGAGAAATTTAAGTCAGTGCTTCTCTGCCTTTTTACTGCCAGTCATTTCAATTTCAAAAGGATATAAATGAAAACTTTCCTACTTTAAAGAGCATTTAACAGAGCTTTGACCAGATTTTGCTGCTTGCCTTACTTATTCAGACTGGGATCTATTCCAGCTAAATGAAAAGAAGTGTGCACATCTCAGCACGCACCAGTGAAAACGAGAAATCCCGAGGGATTTACTTTTATTTTCTTGGCTTTCAGAAGTTTGAATGTGAATTTCTTCTTAAATGACAGATCTGTTGAGTATTGTGCAGGCCTGTGGAACCCAATACACAGTGCGTTTATGCTTTCCTAATACTACCCTCACAACTATGCAACTAAGTGCTTGTAACTATCAAGTGCTTTCCTTACGCCTATTCGCCCATGTATTTGAGCCAACAATTTCATCTTATTTAGGCATACTGTGTGTAACGGGGAAGCTGGTCAATGGTTAAAGTGGGGGGAAAAAAAAAAAGTCTCCTCTATAGCCGTAACTTATGGTCTCATTACCTTTACTATGACAACTGTATGAAAACTGCTCTTTGGGTTAAAGGGTCAGGAAAACCAAGTGCTTACTAATCCTTCTGATTATTTTTTTACATTTAGCTAAGCGCAAAGCACTGACTTTGAAGAGATGCAGGTATCAGTGGTTTTCTTTTATTCATTTGCTGAGAGAAGAAAGTTGTCTTTCATCAGTCCGTAGACACATTCACAAGAACACATTAACAATTCTTGGGATTGTCATTTAATCAGTTCCATTATTTAATCAGAAACATGATGTTCATATTTCAGACTAATGAAAGACTTCATTTACTTAGTAAATTTAATTTGGAGGTTGCCTCTCTCTCAATACTTATATTTTTAATATCAGCTGAATCACGACAGATTTATTCCTGCCTGTAATCTAACTCAATATTTGGATCTGGATACTTAAATTTTAATTTGCTTCTTTCTCCCACCTAGATATGGATAACTAATGAAACCTAGTTCTTAAACATTTTATGTAACACCTTTCATCACTGCTGATGACTACTCAGCACCCGTTTAATTAGTTATCTTTCGACTCGATTATTTTTTCTCTCTGATATCGTATTTGGCACTCTCACAGAAGTTCAGGCCTTGATCTTGGGAAGTGAGCCAAGCACGTTGCTCCTGACATTTCTTTACAGCCAACTTTTGCAGAAGGAAATGATAAGCACGGTACTCAGATGGAAGGAGCTTTGATCATGGTCAGCAAAAAGGAATTAAGGGCAAAGAGAGTCCTCAGGAACAGGGTACTCATTCTGAATGGATGTACATTAGTTGGTTACAAATGACTGCCAGGTGACAGCAAAATGTCCCGAAATGAAAACCTTGTAATCACAGACCTACCAAGGAATAAGACAGGTGTGTATACTTGGTACAGTTTATGATGGCAACAAACTCAGAAGAACTCAATTATGTTGTCGGCAGAGTCTCTGATTTCTTTCTCTGAAAGAAAAATACACTCCAGACCCATAAAACTAATTTGGAACTTCAGATCTCTAAAAGCCTTTCCCTCTGAAAGTGAGATAAATGTGTGGATTATTCCATAAGTACCCAGCTCTCAGAAATGAGCCTGATCTGTAGAAATAGCTCTGCTACTATTCTGGGGAAATGATGCTGTGCCAACCATCTGTTATGCCAGAGTGAAAAGAAGACCAATCAGGTATTATTTAAAGAAGAAAAAAACCATATTCCTTAGATTGCAAGGTATCCCAGGGAAAGGTTGGCTCTGGGTGTTTGTGTTCATCCTTCAGACAACACTACCATATAGATGAGAAAGATGGTAAAGAAATGGTAGGAGCCCTGTAGGGATGAGGATCATTTTCCTCGTTGTGGAAGAGGACTGGTGTCCATGCCCATTGGGTGCTGCATGATCAACCATTGGAAAGATGGCTTCAGGACTTCATAACATCAATCCTAAAACAGCACCTAAATTCAGAGGAGGATGCTTTCTCATATCCAGCCACACTGCAGGCTACCAGCCCCTGTCATCCCAATGATGCAGACAGGCTCTGGCACTGCCTTGGGTCAATAATACTGACTATGGTGCTCTTTCTCCCCAG
Seq C2 exon
CAGATGTTCCAGCCCTGTCCCTGCGGCTGGCAGACGGTGACAGCAGGTGCTCGGGCCGCGTGGAGCTCTATTACAATGGCAGCTGGGGAACAGTCTGTGATGATGGCTGGGATCTCGGGGCTGCCGAGGTGGTGTGCCGGCAGCTGGGCTGCGGGGAGCCTATGCTGGCAGTGCCTGAAGCACAGTTCGGCCAGGGCTCTGGGAACATCCTCCTGGATGAGGTGCAGTGCAGAGGGGAAGAGGACAGCCTGTGGGACTGCTCTCACGGAGGGATAGGTGTGCACAACTGTCAGCCGAAAGAAGACGCAGGCGTCATTTGTGCAGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009588:ENSGALT00000015621:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.6)
A:
NA
C2:
PF0053013=SRCR=WD(100=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]