GgaINT1001434 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C1A5]
Coordinates
chr6:30875197-30876026:+
Coord C1 exon
chr6:30875197-30875292
Coord A exon
chr6:30875293-30875714
Coord C2 exon
chr6:30875715-30876026
Length
422 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTCCATGTACCACATCCCAGGCT
3' ss Score
3.27
Exon sequences
Seq C1 exon
GATTTGTAGGAGTGACCTCCACCACAGAGACAAGTGCCCCAGTAACAGAAATATTGTTGGCAGAGACGACCTCCCCAGTGGAGAATAACACTGCAG
Seq A exon
GTAACTGTGCCCACTGTCACTCACTGTGCCTCTTTGTGCCCCTGATGTCCCTTCTCACAGTAGTTAGCAATGGAGGTGGTCTCCCAGCCCTGGGCCATTCCAGTTGAGCATTCCTGACAGTCATGTTTGCAGGGAGGATGCAAGCAGAGCGTGGAGGAGGAGCTGGTAGTTTGGGAGTCTGTGTCTTGGGGCCAGGATCTATTGGGCAAGGAAACTGCTAGTAGGGGGATTTCTTCTTATGGCAGATGGGGACGCTGCAGCAGAGGGTTGTGGAGTGTTTGCCCCTTCAGTTCCTGCATAGATAAGTATTTTGTGGAAATGGTCTGCATGATGAGCATGCCGTGGGATGGGAGCTCCTTGGAGATGGGTTCTGTTGAGGAGCTTTGGCGTGCCCTGACTGTGTTCCATGTACCACATCCCAG
Seq C2 exon
GCTCCCGTGTACGGCTGGCCGACGGCCGACATGTCTGCGAGGGCCGTGTGGAGGTGCAGGACGGGCAGCACTGGGGCACAGTGTGTGACGACTTTTGGAGCCTGAGGGACGCGCACGTGGTGTGCCGCCAGCTGGGCTGTGGGCCCGCCATCACCGCCCCGGGCAGTGCTCACTTTGGTGCCGGCACAGGCCGCATCCTGCTGGACAACGTGCAGTGCCGTGGGGATGAGGCCTCCCTGCTGCACTGCCGGCATGGCGGCTGGGCCGTGCACAACTGTAGGCACGCAGAGGATGCCAGTGTCATCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009588:ENSGALT00000015621:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTTGGCAGAGACGACCTC
R:
CTGCACAGATGACACTGGCAT
Band lengths:
356-778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]