GgaINT1001524 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NAZ0]
Coordinates
chr5:16165927-16166641:+
Coord C1 exon
chr5:16165927-16166229
Coord A exon
chr5:16166230-16166326
Coord C2 exon
chr5:16166327-16166641
Length
97 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
AGCACCTCTCTCTGCTGCAGCCT
3' ss Score
7.57
Exon sequences
Seq C1 exon
GGTTCTCCCGGCTGGCCGGAGGGGACAGTGAGTGCTCAGGAAGGCTGGAGGTGCGGCAGGGCCAGACCTGGGTCAGCGTCTGCCATGGCCACGTGGACCTCATGGCCGCCCAGGTGGTCTGCAGAGAGCTGGGCTGTGGTACTGCACTGGCCCTATCTGGGGCCGAGCCGTTTGGGGTACCAGCAGGGTTATTCTGGAATGGTGCCTTCGAGTGCAATGGCACCGAGCCCTTCCTGTCAGCTTGCACAAAGCGGCCTCCCCACATCCAGAACTGCACCCAACCCGCTACCATCATCTGCTCCC
Seq A exon
GTAAGTGCTGGCTCTGCAGGGCTACATCAGCCCCAAACCATGTGGTGGCCTGGGGAATTTCCCACTCCACCAACTCCAGCACCTCTCTCTGCTGCAG
Seq C2 exon
CCTACAGCGGGTTCCGGCTAACAGATGGAGTCTCGGCCTGCGATGGGCGAGTGGAGGTGGAGGCACGAGGGGTGTGGGTGCCCCTGTGTGCCACTGCCTGGGACATGCCTGATGCACACGTCCTCTGCCACCATATGGGCTGTGGCTCTGCTGTCTCCCTGCCCCCACCAGGCCATTTTGGGACAGGGATGGGGATGCTGCGGAGCGATGCCTTCAGATGCAGTGGGAGCGAGCGGCACCCGGGCCAGTGCCCCGTGGAGGTGCTGGGGCAGCCCGCCTGCCCCCCCGGGCACACTGCAGCCGTCAACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010831:ENSGALT00000011767:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.1)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCAGAACTGCACCCAAC
R:
CATATGGTGGCAGAGGACGTG
Band lengths:
179-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]