GgaINT1001575 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P341]
Coordinates
chr7:21630232-21630741:+
Coord C1 exon
chr7:21630232-21630456
Coord A exon
chr7:21630457-21630554
Coord C2 exon
chr7:21630555-21630741
Length
98 bp
Sequences
Splice sites
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
3' ss Seq
ACCCCATCTCCCCGCCCCAGGTC
3' ss Score
9.3
Exon sequences
Seq C1 exon
GAAGCGGGAATGTGGGAGGCTTCCTTGGCTTTGGGGATCCCTGCACTGCTCCCTCTCTCTGCAGAGCTGACCACAGTGTGGGGCACCAGCAAGGACCCGGGCGGCCATGCCTCGGCACAGGAGAGCCAGACTGAGGGCGGCTCTGTGGGGCAGCCAGCGCCAGGCTCCCCTCACTCCCCTCCGCCCGGCCTCCCGTCCCCCCAGCACCACTTCTCCTCCAAAATG
Seq A exon
GTGTGTGCTGAGCACCCCTCCTTTCATTGGACCCTATGGCGAGGGGAGCCAGCATGGCCAGAGCGGTGCCGGGCCCTCACCCCATCTCCCCGCCCCAG
Seq C2 exon
GTCATCCGCCCAGAGCCCTGCGGTGCCTGCGGCTCCCGCCTGCGCTTCGGGAGGGCCGCTCTCAGGTGCCGCCAGTGCCAGCTGCTGCTGCACCCCAAGTGCCGGGAGCGCTGCCCTGGGCCCTGCACCGCCCGGCCTCGCCCACAGCCCTGGCCCCGCGAGGTGAGCGGGTGCCCGTATCCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011252:ENSGALT00000018359:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(11.5=8.0)
A:
NA
C2:
PF0013017=C1_1=PD(84.6=69.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGAGAGCCAGACTGAGG
R:
CACCTGAGAGCGGCCCTC
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]