GgaINT1001646 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWS8]
Coordinates
chr2:42151268-42152903:+
Coord C1 exon
chr2:42151268-42151346
Coord A exon
chr2:42151347-42152757
Coord C2 exon
chr2:42152758-42152903
Length
1411 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
TATCTACGCTTATTTTGCAGGTC
3' ss Score
10.19
Exon sequences
Seq C1 exon
GTTCTGCTAGTATTTTCAGATGGTCTGGATGATTCACTGGAAGATCTCAGAAAAGCAGCCAATGCCTTTCGCCTCAAAG
Seq A exon
GTATTACAGCACTGCATTCATGCTCTGGTCTCCTACTGCCCTGAGGCCCAGTGTATTGCTCTGCTACTATAAATTTTCTAAATAATACAACTCGATGCACGTATAGAGTTACTCAGAAGTCGCAGGGAAAGTGTTTGCTTCTACATGTGAACCTATGTTAGTGATGTTCAGAATAATTGTGCATTCCAGGGCATTCACAGGGGTTTTTCCATCTTTAGTTATATTCTTGAGCTGATCTTTTTAATGTATTAAATGAAAACTGATAGTCTGATATTTTAAAAATTATTTTTTATTCTGTGGATTATTATTTTCTGGGTTTGATCTGTGTCAGAATCTTCTGCCCTGCTGACCTAAAGTGGAAACAAAACAGTGACTGGTTTTATGTACAGGGCAAACACTTAGTTTCCTAAAATACCTTAGGATTAACTCCTCTGAAAAGATGTGACTATTTTACTATAAGACACCTTCCTTTAATTGTGCTCCTCTGGTTTGTACCCTTCTTTAGCTGTGCCATCAGAGACTGTTGGTCAGAGCCCTTTCTGTCACACCATTGCGTGTTACAAGATTCCCTCTGCCTTAAATGCAAATTGTAGAAAAAGTGAGAAGCAAAGAAACAAGTTTTGAATCTAAGAAGAAGAGGGGTGTAGAGATTTCCTCAGAGAAAAAGCATTTGAGGAAGGGAAAAACTGGCTTTCCTTCATACTATTGTATGATAGAAACACCAAAGTTGTATCTACAGTAAGAAGAAAACTTTAATGAATGACTAACATATGTGATATACGATATGATACAATTCCCTTGTGAGCTAGAGAGAAATCCTGATTCTATCCACAGGACATTCTTGTCAACAGGAAAGGTCAACTAAATGGAAACTGGAGAAATCCTGAAATCTACTTTTGCCAATATGTTATTTAGTAGGTAAATGTAGACAGATCATTTGAGATTGGCTCCTGGCTGAGAAGGTGGTTTGAGCAAGCCTTAATCTCCCCTTTCCCACTCTTACTCATTTTGGTTGATAGATGATGATAGAAACATTTCTAGAGTGCAGGGAACCTAAGATGCTCCTGATTTCTGGAATGCAACTCCAGCAGCTAGACCAGCTATTCTTACTGACAAATGTACAAGATGTTAAGCCCAACTCTGGCATATGCAGGAGAGAATGCGTACTCATTTCTGTTCAGGTACTGAGGTTAGCTCTTGAGCTGAAGTAGCACTTCAGTCTAAAGAAGGGAAGTTAATTGGAAAATTACTAGTCTTAATTTTTGTCTCATGTGTTGTTCTCAATGGCTCTATTTCATTTAATGTAATGTAAAATACAGGTTTTAGAGAAATGCTTTTATTCACAATCATGTTGCTGATTAAATAATGTAGTTCAGGCATTCACAGACTTCTATCTACGCTTATTTTGCAG
Seq C2 exon
GTCTTGATGCACTTCTCTTAGTTGGCTTGGACAATACCCAGAACCTGACTACACTTCGTGAAATAGAGTTTGGCAGAGGTTTTGGATACAATGAACCTCTGAGTGTTGGATTTCCAGAGATTGCAAGCATCTTGCAGAGAAACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567:ENSGALT00000018866:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTAGTATTTTCAGATGGTCTGG
R:
AGGTTTCTCTGCAAGATGCTTG
Band lengths:
222-1633
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]