GgaINT1001666 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWS8]
Coordinates
chr2:42168444-42170569:+
Coord C1 exon
chr2:42168444-42168506
Coord A exon
chr2:42168507-42170533
Coord C2 exon
chr2:42170534-42170569
Length
2027 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATA
5' ss Score
5.05
3' ss Seq
CTGTATTTAATTTGTTTCAGGGT
3' ss Score
9.58
Exon sequences
Seq C1 exon
GGTAATGCTGGCACACCAGGTTCCCTGGGAGATCCAGGGGACCAAGGACCATCAGGACCCATG
Seq A exon
GTAATATATTTTTAAAAGATCTTTCTACATATCTCTTGAATTTCTATTTGATTAATAGAATATTTAATACTGTTTCATAACATATGCAGTACTTAATCAGTCTGCCAGCCATGTGGAACTGCATCTTGCCTGTGGATGTGTTCACACAAGAGCACCTGCTGTTGGAAATGGAACTACAATGATACAATGCAGGGCAGAATTTCTTCCACAATACTTGATGTCTCTCTCCAGTGGTTAAAAATCTAATCTAAGAAAGATGAGAAAACTTAAAATGTAGAACAAGGTTGTTCTGCTGAAATCCAGAGTACACTTTCATTTAAAAAGAGAAGCCATATAAAATTAGATTTACAATTACAGGCACCCATTTAAAGCTTGAGCTGACCATACCCTGTTACGCCTCGTATACAACTGGATGAATTGCTGTATTTTCTAGTGCTTTTGATCTGTATTTTATACAGAAAAGATTATGTTCTTTATCAAAGTAGGTGAAAGAATAATGAATTTCAGTAGTAACTAGGACTACCATTGTAGGCATTCATTTTTTCCTTTAAAGTTTTTTTTTTAAAACTTACATTTTTTGTTTTAAAATGTAACTATTGATAACACTATTTTTCCGTATGATGTGGCCTACAGGGTACATGCAACCTAGAAACATAATTTTTGGTCATTGCATTGTTCTGACCAATGAATATATCTAGACCACTATATTTTATGCTGTTTGGCTGTCATCTATAATGTCTGTGTTATGGACAGACAGACCTTGCATGCTAATGAGCCATGTAGTTGTTTGCCTTGCCAATCCATGGTCCAAGAAATCTTCAGACAGATTACAAGCTCAAGATCTCCTCTTCAGATGCAGAAGTGAGAAGGGAGTATAGAATGTATGGGCTTGGTGGGATTGTTGTAGTAGCAGTGCATGAATGAAATAAGGAAGTGGGAATTTTGCAGCAAGTGGAAGAGAGGGGGTTGCGGAATGGATACAAGTAGTAGGTAGAGCCATCCAAAAAAGGGCTGTTTTTCCATCTTTCTTATCTTGCTGGTGGGGTTATCTCTTTGGTCAAGTTTGTACAGCTAATTAGCTGAGGAAAAGATGAAGATAAATACATGGAATATTACGCTAGCAGCAGGAAAGCTAAGGGGAAGTAGCTCAGAAAAGAGATGGGTGAATGGAAGGTTAATTTGAGGAGGAAATAACAAATGTGGAGTTGGGATTCTTATTTGGGGATGCAAGGAAGTATATGAATCATGAAAGAGAGAGTCTGAAGCAAAGGTTATGATGTATGGAGTTCGAATTTTTCTGGTTTACCTCACTATTGCACCTTCTGACTTAAGTGCATATATTCAGTAACCTTGCTAAATATTTGAATTTCACATACGACAAAAGCTCTCAAGCTGACTTAAAGGGAAAAAAATAAAAATCCATTTTCTCTATATTTCATTCCTACTATGAAAATTGAACAATTAATTCAAGGTTTTGAAAAAGGTTGTTTGGAGTCCTCACATTTGCCCCTCAGCTCCCAGAGAGAAGGCTGCTGAGTTGCCAAAGCCAGCTAAACTGGCTGAGCAATCAGGATGTGTGCATGGTCTGCAGAACCTCTTGAGGTTGAACTGTTGGGATTTTGCCCTGCAAGAGAGAGCAACCATGTTGCACATCAGAGGTTGAAAAAGATGCAAGTTGCAGATAACTGAACCAGAACATTTTTTTTTTTTTTAACTAACAGAGACTGCTGTTTAGGAAGGAGATCCAATTCAGATGGATACTGGTCCTCGAGAGTGATAGGTAGTGAGCATTTATAATAACAAGGAGACGAATGTACTGAGAAACAGGCTGGACTGGTAGTCTGCAAGTCTTTTGGGATCAGGTTCGTGATAATCCATGCTGAGCAGTGTTATCTCCTCATATCTTAAATTTGCAAGTGGTTGTCAGGGAAACACTGTATGCCTACATTTTCTTTGGACTACAGAGTCGTAGATGAAAATATGTTATCAGAGTCTAATGCTCTGGATCTGTATTTAATTTGTTTCAG
Seq C2 exon
GGTGCCAAGGGACAAAGAGGCACTGTTTTAATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567:ENSGALT00000018866:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(32.3=100)
A:
NA
C2:
PF0139113=Collagen=PD(12.9=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]