GgaINT1001721 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75746951-75750893:-
Coord C1 exon
chr1:75750808-75750893
Coord A exon
chr1:75747132-75750807
Coord C2 exon
chr1:75746951-75747131
Length
3676 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGC
5' ss Score
5.9
3' ss Seq
TTGCTTTTTCCTTTTTCCAGGCA
3' ss Score
10.78
Exon sequences
Seq C1 exon
ATGATGAGGAAGGACTGGCTCTTCGACGAAACAGTTATCTTTCTCCTTTTCTTCTTCCCTGGAAACATCTCTCACACTGCAGAACC
Seq A exon
GTAAGCTACACATATGGAAGAGGGAGGGAGGTCACAGTGCTTCTTCCAGTAATTTTAATTTCTTTCTCTCATTCTTCAAACAGTTGTGACAATTTCTTCTACTTCTGCCCTGCATCCCACTACTAGCCCATCTCCGGCTCTCCTGAATAATTCTGACAGTGTTCCTTTTTCTCTCCTACAGCCTTCTGCTAGTCCAGCCCTGTATCATCACAGCATCTCTGCCTAAATACAGTCTTGCCTAGAAATCTTCAGATGGCTCAGCTTTTGTGAGCATGCATGTACTTACCTTTCCTGTAGTATCCTTGTTTTGATCACTGTTCTTCTGTTCTTGTTTTTTTTTTCCCAAACTGGTTTATTCCCTTTCTTGTGTTTCTTTCAAGACAGTTTGTTTCTCTTGGCAGCATCAGACATGCTTGTTCTCAAAGAGAATCTGTGACCTAGATTCTCTTTCACCAGCATTGAGCCAGGCGCTGGCACTCTCCCTGGTGTGTCCACCCAAGTGCTCTGCAGACAAGCTGCATGGCTGCAGTGTCCACCCTGCTTGGAGTCCCAAGCAGAAGGTATACCTGAGCATCCCCACCAAGATCTCACCTACCAAGAGGGTTGTTCCACAGTCTCAGATCCAGGCAGAGCCATCTCATTCTTCAGACCTTGCTGCTATCATTGTGCTTATTACTGTGCTCTCAAGCACAGTTCTCTTCTGTGAGAAATAGGAGCAAGGGGATAAACCAGTTTGAAAAGATAATGAGGAGCTGCAGTTCTGAACCTCATCTCATGATGCCTGCTAGAGATTTCATGCTCATAAGCACTGCATTAGCACTGGTAGGTATAGTATAACACGCAGCATTCACTGCTGTTGCTTACTGTGTGGTCAGAGGTGAAGTGGTAACAGACTAAAAGCTAAAGGATTTTTGAGTCATACTGTGCCATCACCATCTCATTCATCTGTCCTATTTCACTGGTTCTAGAGTAGATCAGCCAGCCAAGTCTTTTCTGGGGTCATATAGGTCTCCCTGGTAGGGAGACCAGAGAGCTCTATCTCTTGTTATTTCTGCCCAGGATCAGGTGAAAAAGGCATGAACCCATACTGTTGAGTCCTCCCATGAGCAACATGTTGCTCTTTTCCCCTTACCTGAGCACCATTGTGGGAGGAGAGAAGGAGAAAATGTTGAAAGAGATGGGATAAAGAGAGATGTCAAGTCTTCCAAGTCAAAACAAAATGAAGCTTCTGACCAAGATACTTTTTGCCTGAGGAGACTGCTTCTTTGAACAGCAGCAATTGCTGTTCTTTCTGCTTCAGGTGTGACCAGCTGCTCAAGAGAGGCAATTAAGTTTCAGATTGGATACTAGAAAAAAACTTATCATGTTAATGCAGCATTGAGATGGCTGACCCAGAGATGCAGTGGAGGCCAAAATTCCCTATGAAGTAGGTCACACTGTCCCCTCAGACTGGATGTTGCACGCAGATTGCCAGTGCTACTGGCAGGAAGCAGGGGAAAAGAGATTAGAGGAAGCACAGGCTGAAGCTATGGTGAGAAGGTTGTGAAAGAAAGTGATGGAGTAAGCATCTAGTTAATGTGGCATAATCAAAAACTTTAAGTCATTCCCTAAGTGGTTAGAGGTTCCTCCTTTCACTGCTTCTGCAGATAGTGGCTGGAGATACCTGCTGGTTTCTTACCACATTTTCCTTCACAATCAGGCAAATGGATCCCACTGCCTCCAGTGTAGCTTCAGGATTGCCCTAGATGTCTCTTTTCCCAAGACTGAAAGAAGACCACCCAATTTCTGCGTTTCTCACAATAGTTCTCCATGAACATACTCAGTCCTGTCAGTAACAATTTCTTTGCTCAGTTGCTCTGGATATAACTCCCATTCCCCAACAAAGCTGTTAGTACTGCCATACTTTTTCCTCGGTCACTTGTAACTGTGTGATCTTTACAAAATGGGGTAGGTGGTCGTCGTCTTCCCTTGCTGAATCTCATACCAAATTTAATGTAGCTGGAACAGCAAGACACATATCACATCCTAGAGTTACCAGAGGCTTATTTTTAATGGGCTGCACCTCACTGGATGTGCAAGCAGGGTACCAGTTATCCAGTTTAGTTGTATCTGTTAGCTCCTTTTTCTCTTTACTGAAGGAAGGACAGTCAGCTGCTGTTTATCATGTGATGCAGCCTGAGTATATTTGCTATCTTGGATTGCTTGAGAGTACCAGAAGGTTCAAGAGCCACAAGCTAGTCATACCAAAATTAATCTTCTGGGCTTTATAGTACCTGATGACATTAGGTTCCTTGATTTAATTTGATATTTTGGCAAAGAAGTTTATGCTTTATTTTACTAAATGACTCAGTTAATATTTTAATGTAGCATTGTTTAGTATATCCGCTGTCACAGGTGATGAACAATATCAGTTTTCTTTCATTCCTTTTTCCATGCTAAAGAATGTTAATCTTCCAGATTTCAGACTCTGGCATCTTTCAGTGAATATTCTCTTCTAAATCCCATTTTTTAAAATGAGAATATAGCAACGTACCTTTTAGTTATACAATAGCTAAACTGTTTGTTCTGATTTGTTCTATATTCCTTTATTTAAGAAAAGAGAGTTAAGAATAGCTCCTTACAGTCCATTTGTCACTTATCTCTGAATGAGGATTTTACAAGAGTTCTTGACAGTGCTCATCTCCAAGTAGTAATAGCAAATTTAGCTATGTGTACACTGTTGGGGGTGACATTTCATTCCTTAATTCGTTATTTTCCCTTCATGAACAGTTCATTTGCTATTTTTTCTACACATTTCCACAATACAATCAAAGTTTTTCACAGCTACGCTAGTCAGTACCTCACAGATTATTCATCAGTAGACTGAGCAGCAGGGATCTCTACACAGATTCTTGAGATTTTTACTGGTGACCACCTTCGGCTATATAAATCCACTATTATTTCTTCCCCTTTATGCCCTAGTTTTTAACCAATTAATCTGCATCAGAATTAATAATTGGATTTATTAATGAAAATTAGTAAAATTATCCCTTCTATTGAATGTCAACTGATGTCTTCTCCGAGAAACAAAAGTTCTTTGAAAGTACAAGTACACTTCTGTTGTAATAAAGCACTGTCCTCTGAAATGCTTTGTGTGACCACCTTAATAAGGTTATGAACTGCAGCACTCCCATTTTTGCTCAGCACGAGGAGGATTTGGAAACCTGGACAGGCAAGAAAAGGAGTAGCTACAGAAGTTGGAGTTTTTTCAACCCTAGAACTGCTGAATCTCCAACTTTTTTTAGCTAATGCTTTCGAGTCTCATGAGGCTGTGGGATACAAAAAAGTTGAGTAACAGCCTGAAACTTTTCATGCCATCCTTATTCCCTACTGTGAAGCTGAACAAAGCAGCCTTTATAAAGGACTGTCTATTATTAGTGTAGAAATTGTTCCTTCCACTGAAAGAATTTTCCTTGTTATTAGGCTAATTAGTTTGGTGGTTTGACATGTATAAACCCAAAGTAAGATGTATACTCATGTTTGTGCACTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACAGTATATATTTAACAGATTCTTGCTTTTTCCTTTTTCCAG
Seq C2 exon
GCAGTACATGGTGCTTCTGCCCTTTCTGATACATACTGGTTCTCCTGAGAAAATCTGTGTTCAGCTGACACACCTGAATGAGTCTGTGACACTGAGTGCTACACTTGAGTATCAAGGGGAAAACAGGAGCTTGATTGATGTGGTGACAGAGAAGGATGTGTTTACCTGCATCCCTTACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]