GgaINT1001865 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:17182951-17183836:+
Coord C1 exon
chr7:17182951-17183022
Coord A exon
chr7:17183023-17183640
Coord C2 exon
chr7:17183641-17183836
Length
618 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TTAAAAACAACTTATTTTAGAGG
3' ss Score
3.04
Exon sequences
Seq C1 exon
TGGATTACGGAAATCTGGGGGCAAGGGCAAGAAACAAGAGAAAGAAAGTGTAAGAGGTTCTCTGGATAGCAG
Seq A exon
GTATTTGTGCTTTTTGTTTCAGTAATACGTGCTGCATTCCTAACATTTTCAACTAAGGAATTTCTTTGAAATCATCATTAATGTTTGACCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTAAAATAAAACAGGTAGCATAGAGGAAAGAGTCCATCAAGGTTACATTGTAAAGTGACTCATAAGACTAACATGTTACACCCCATTTAAATACTAAAACTATATTTTACTTAGGAAGGAAAAGAATGTTGAGTGAATTATCAAATATTTGGAACTGTTCGGTTATTTTGTGAAATATTGAAAAAGATCTTAACTTAACCGATAACTCAAATTATTTTTCATGGATTTTCAAAGACAAGTCTCAGTTTTCATTCTTAATATCAACTGTGCTGTGAAACTGGTGTAAATGAGTGGTGTATATTTTTGTTCACTTGTTTCTTGTGAGTTTTCATTTTTGCTTTATTTAAAAACAACTTATTTTAG
Seq C2 exon
AGGTTCTCGAGAACTGTTGGATGATTCTGGCAACAACCTGTCTGCATCAGATTCAGATTCTCCTGTTCCCACTTGCATGCCTTTCTCTTGGTTTGGAGACAGTCACAAAGAGCCTCAGGTTTCTAGTAGTAGTCTGCACTTTACTCAGAGTGGACAGGACAGCTGTGAACATGGTCAAGACAAGAACAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013233:ENSGALT00000021611:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTACGGAAATCTGGGGGC
R:
TGCTTCTGTTCTTGTCTTGACCA
Band lengths:
265-883
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]