GgaINT1001961 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L2I7]
Coordinates
JH376378.1:12937-13705:+
Coord C1 exon
JH376378.1:12937-13242
Coord A exon
JH376378.1:13243-13387
Coord C2 exon
JH376378.1:13388-13705
Length
145 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GGCATTTCTGCTCTCCCCAGGCC
3' ss Score
9.08
Exon sequences
Seq C1 exon
GGCTCAGGCTGGTGAATGGCAGCACGGCGTGCATGGGCAGGGTGGAAGTGGAGGTGCAGGGAACATGGGGCACCCTTTGTGCCTCCCGCTGGGACCTCTTGGACGCCCACGTTCTCTGCCATCACCTCGGCTGTGGGTTTGCGGTGTCCGTTCCTGAAGGAGGGCATTTTGGGAGAGGAACCGGCCCGGTCTGGAGTGACTCGTTCCATTGTGAGGGGACTGAGTCCAGCCTGGATCAGTGCCCGGTGACCGCCCTGGGGGCCTCTCCGTGCTCCCATGAGAACGATGCTGCTGTCATTTGCTCAG
Seq A exon
GTGTGTGTCAGGATAATGCTGCTGGAATTCCACCTCGTGTTCCACATGGCCACCCAAAAGTCGGGGATCCCCTGGCATCACCAGGCTGAACCTCTCCCTGGAGAAATCCTGCAGTGTGCATTTGTGGCATTTCTGCTCTCCCCAG
Seq C2 exon
GCCTGCCTCACAACGCATCTCTAAGACTGGTGGGTGGAGGGAGCCGGTGCGACGGGCGCGTGGAGATCTTCCAGCGCGGGACATGGGGCAGAGTCCTGGATGATCAGTGGGACATGGAGGACGCTAGCGTGGTGTGCCGGCAGCTGCGCTGCGGGGAGGCAGAGGCAGCCTACACTGTGCCGAGGGCCGAGCGAGGGACGGGCCCCATGGGGCTGCGCGGGGTGGTGTGTGCAGGCCACGAGGCCAGCCTGAGCCTCTGCAACACATCCCTGCCCGAGGCCACGGCGATCATGGAGGACGTGGGGGCCGTGTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013442:ENSGALT00000035907:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=95.1)
A:
NA
C2:
PF0053013=SRCR=WD(100=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATTTTGGGAGAGGAACC
R:
TGATCATCCAGGACTCTGCCC
Band lengths:
251-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]