GgaINT1001964 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L2I7]
Coordinates
JH376378.1:14879-15286:+
Coord C1 exon
JH376378.1:14879-15193
Coord A exon
JH376378.1:15194-15264
Coord C2 exon
JH376378.1:15265-15286
Length
71 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
AGCTCTGGGCTGCGTTCCAGCCC
3' ss Score
3.96
Exon sequences
Seq C1 exon
ACAGGGAGAAGATCCGTGCTGTGGGAGGCAAGGATGGGTGCTCGGGCAGAGTGGAGGTCTGGCACCGTGGCTCCTGGGGAACTGTGTGCGACGACTCGTGGGACATGCAGGATGCCGAGGTGGCATGCAGGCAGCTGGGCTGTGGCCCTGCGGTGTCTGCCCTGGCCGAGGCTGCGTTTGGGGAGGGGACAGGACCCATCTGGCTGGAGCAGGTGGAGTGCAGGGGCACGGAGCCATCTCTGCAGGCTTGCTGGGCCCGGACTGGGGATGGCGGTGCCTGCCGGCATAAGGAAGATGCAGCTGTGAACTGCTTGG
Seq A exon
GTGAGTGGCTGGGGTTACGTAGGCTCTACTCACGGTCCAGTGCTCTGGCAGAGCTCTGGGCTGCGTTCCAG
Seq C2 exon
CCCTGAGGAAGGGACAATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013442:ENSGALT00000035907:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF118373=DUF3357=PU(5.3=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTGCGTTTGGGGAG
R:
CCAGATTGTCCCTTCCTCAGG
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]