GgaINT1002044 @ galGal4
Intron Retention
Description
NA
Coordinates
JH375515.1:11675-12974:+
Coord C1 exon
JH375515.1:11675-11938
Coord A exon
JH375515.1:11939-12639
Coord C2 exon
JH375515.1:12640-12974
Length
701 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
TCCACATGATCTGAATTCAGGGA
3' ss Score
4.37
Exon sequences
Seq C1 exon
TCCTACAGACGGATTTTGGGCTGCAGGTGACCTACGATGAGGACTGGGCCGTCATGGTGGCGGTGCCCAGCAGTTATTTTGGGGCCACCTGTGGGCTCTGTGGGAACTTCAATGAGGACGGGGAGGATGAGATGAAGCGTCCCGATGGCACCGCGGCCGCCGACGCGACGGATTGGGCTGAGAGCTGGAGAGATCCCTCGTGCCAGGAGGACTGGAGAGAGGAAGAAACACTGCAGGACACGGTGCAGGACGCAGTGGGACGCG
Seq A exon
GTGAGCTTTGATGTGTGGTTCTGGAGCATTTTGGGGGGAGAAAAAAGGGGTTCTGTGCCAGGTTGTTGCTTGTAGGCATCGACTAAGCCAACGTCTCTCATGCTGGGGAAGAGTTGCGTTGGTCTTTTTGTGCCAAACCACCCCAAAACCCACACAGTCTGACTTCAGATGCCCACAACACACAGAATGACATTGATTTTTTCCAAGGGTTGTCCACATAAGGCATCTTGGAAACCCCAAATTTCATGTAGGGACCAACTGAGCCAACATCTCCATCACTGTTGCAGGGTTGTGTTGGTCTTTTTGTGCCAAACCGCCCCAAAATCCACGTCGTTTGACTTCAGATGTCCCTAACATGCAGAATAACATTGAGTTTTTTTCCAAGAGTTGCCCCCATGGGGTATTTCGGGGTCCCCAGATTGGTCCAGATATCAACTGAACCAACATCTCTATCATTCTTAAAGTGTTATGTTGGTCTTTTTGTGCCAAACCACCCCAAAAACCACATTGTCTGAATTCAGACGTCCGTAACACACGGAATAACACTGATTTTTTTTTCCAAGAGTCGTTCCCATGGGGTATTTGGGAGACTCTGAGTTGCTTGTGGGGACCCATTGAGTCTCCATCACTGGTGAAGGGTTGCGTTGACTTTTTTTTTTTGTGTGCCAAACTGCCCCCAAATCCACATGATCTGAATTCAG
Seq C2 exon
GGAGCCAAACGGATGGCAAACAGTCCTGCGAACCCCACGAGAAATGCACTGCGGACAGAAGTGCCCCACGCCGTCCAGCGACCAAAACCTCCACCTGCATCGGGACGGGCGACCCTCACTACACCACCTTCGATGGGCGGAAGTATGACTTCCAAGGGACGTGCATCTACCAGTTTGCTGCCCTTTGCTCATCCGACCCCACGCTCGTCCCCTTCAATGTCACCGTGGAGAACAACAACCGGGGCAGCAAAGCAGTGTCCTTCACCAAAACCGTCACCATGGAGGTGTATGGAGATGTCATCAGCATGAGCCAGGAGCACCCGCAGAAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014150:ENSGALT00000022891:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.704 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF0009420=VWD=WD(100=46.5)
A:
NA
C2:
PF0009420=VWD=PU(50.6=70.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAGTTATTTTGGGGCCA
R:
AGTCATACTTCCGCCCATCGA
Band lengths:
348-1049
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]