GgaINT1002710 @ galGal4
Intron Retention
Description
NA
Coordinates
chr10:12537088-12538466:+
Coord C1 exon
chr10:12537088-12537459
Coord A exon
chr10:12537460-12538163
Coord C2 exon
chr10:12538164-12538466
Length
704 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
AGCGCCCCGTGTGCCCCCAGGCA
3' ss Score
9.12
Exon sequences
Seq C1 exon
TGGTTGATTTCAATGGGGTCAGACTGGTGGTGGAGACCTCCAAAGACCCCATCTATAGCTTCAGCGGTGTTAATGTCACCCTGCCCTGCCACTACCACCACGAGCCCGAATCCGAGGCCAAGCACAAGATCCGCATCAAGTGGTCCAAGCTGCGAGATGACTACACCAAGGAGCAGGACGTGCTGGTGGCCATCGGCAAGACCTACATGGCCTTCGGGGACTTCCAAGGCCGTGCTCACCTCCACCGGGCCGGACAGCGTGAAGCCTCACTGCTCATCAGCGACGTGCGCCTGCAGGATGATGGCAAATACCGCTGCGAGGTCATCGATGGGCTGGAGGATGCGAGTGATGTGGTGGAGCTTCGGCTGCGAG
Seq A exon
GTGGGGGCTGGCCCTTGGGTGGCAGCAGGGTGGGTGGGTCGGGAGAGGCTATGGGCAGAAAGAGGTTGGGATACTCAGAGTGATGCGCTGGGGCTTAGTGGGGAGCTGTAGGCTCGTGTGCTCCCATGGGCCAGGCATCCCCATGACAAAGGTCTGGCCATTCCCCTGCTGCTGTCCTTGGTTGCGTTCATCACGGAAAGGCTTGGGTTGGAAGGGACGTCTAAGATCACTCAGCTCCAACCCCCTGCCGTGGGCTGGTTATCCCCACCAGCTCAGGCTGCCCGCAGCCCCATCCAACCTGGCCTTGAGCACCCGCAGGGATGGGGCACCCACAGCTCTGAGCAGCCCGTGCCTGTGCCCCACTGTCCTCTATGTCCCTGTTCCTGCAGTCTGTGCATTCCCGTGGTGATGTTCCACCTCCCTGAGACATCGTGTGCCTGCTAGGACTGTGCTCCACATGTCCCTGTTACCCTAGTCTGAGCGTCCCCATCCCCATGCGCACCAGTGCTGTCCCCGTGCGTGGTTGCGCGTCCCCAGCACTGAGCCCCTCTGTCCCTGTGCCACCAGATGTCGCTGGCATCTTGTTGCTGGTGGCTGCGTGCCCAGAGCATCTCCGCTGCTGGTGGCCCTGCACGCTGGGGTGATAGAGTTTGGCTTTGGGCTGGGTGGGTGTGCTGCCCTCTGAGCGCCCCGTGTGCCCCCAG
Seq C2 exon
GCATCGTGTTCCCCTACCAACCACCCCGCGGGCAGTACAGCCTCAACTTCCACGAAGCCGAGAGAGTGTGCCAGGAGCAGGGCTCCCTCATCGCCACCTTCCACCAGCTCTTCCAGGCCTGGAGCGAGGGGTTGGACTGGTGCAACGCGGGCTGGCTGGCCGATGGCACCGTGCATTACCCCATCCGCCTGCCCCGCAAACCCTGCGGCGGGGTGCACCTCGCCCCGGGCATCCGCAGCTACGGCCCCCGCCACCGGCACCTGCACCGCTTTGATGTCTTCTGCTTCTCCTCCAGACTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021135:ENSGALT00000034015:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=92.0),PF0019312=Xlink=PU(0.1=0.0)
A:
NA
C2:
PF0019312=Xlink=WD(100=94.1),PF0019312=Xlink=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATACCGCTGCGAGGTCAT
R:
AGAAGACATCAAAGCGGTGCA
Band lengths:
350-1054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]