GgaINT1002711 @ galGal4
Intron Retention
Description
NA
Coordinates
chr10:12538164-12538880:+
Coord C1 exon
chr10:12538164-12538466
Coord A exon
chr10:12538467-12538599
Coord C2 exon
chr10:12538600-12538880
Length
133 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GATCCCGCTCTCCTTCTTAGGGG
3' ss Score
8.86
Exon sequences
Seq C1 exon
GCATCGTGTTCCCCTACCAACCACCCCGCGGGCAGTACAGCCTCAACTTCCACGAAGCCGAGAGAGTGTGCCAGGAGCAGGGCTCCCTCATCGCCACCTTCCACCAGCTCTTCCAGGCCTGGAGCGAGGGGTTGGACTGGTGCAACGCGGGCTGGCTGGCCGATGGCACCGTGCATTACCCCATCCGCCTGCCCCGCAAACCCTGCGGCGGGGTGCACCTCGCCCCGGGCATCCGCAGCTACGGCCCCCGCCACCGGCACCTGCACCGCTTTGATGTCTTCTGCTTCTCCTCCAGACTCCGAG
Seq A exon
GTGGGTACCCAAGGGGTTGTGCCACGTGCTGGCGTCCCATGGCCTTGTTGTCCCTAAGGATGTGGCATGCGGCGATGCTGCGGGTGATGCTCAGCCCCACGCACTGCCCTCCTGATCCCGCTCTCCTTCTTAG
Seq C2 exon
GGGAGGTTTTCTACCTGGAACACCCAACCAGAATGACGCTGGAGGAAGCCAAGCAGGCGTGCCAGGATGCTGGCGCTGAGATTGCCAAGGTGGGACACCTCTACTCTGCGTGGAAGTTCCACGGGTTGGACCGCTGCGATGCTGGCTGGCTGGCGGATGGCAGTGTCCGTTACCCCATCGCCAAACCCCGTCCCAACTGCGGCCCCGCGGAGCCCGGCGTGCGCAGCTTTGGCTTCCCCAGCAAGGGCAGGTTTGGGGTCTTCTGCTACAAGGAGAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021135:ENSGALT00000034015:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=94.1),PF0019312=Xlink=PU(0.1=0.0)
A:
NA
C2:
PF0019312=Xlink=WD(100=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCCACCAGCTCTTCCAG
R:
GCTTCCTCCAGCGTCATTCTG
Band lengths:
257-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]