GgaINT1002767 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8212752-8213437:-
Coord C1 exon
chr18:8213366-8213437
Coord A exon
chr18:8212844-8213365
Coord C2 exon
chr18:8212752-8212843
Length
522 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
3' ss Seq
AACTCACTATTATCTTCCAGCCT
3' ss Score
5.81
Exon sequences
Seq C1 exon
CACCTAACATTTTTTTCCAATGGTAATCTTCTTCATGATACATGGAGTAACATCTTGGTTGCTGTCTTTGCA
Seq A exon
GTAAGGACCAGTTTGATGATAATTATTTTGGAATAGATGCTTGTCCTGATTTAAGTTGGGTTTGCAAAAGTCTTGCCATTAATAGAGCATGGGTTATGTGGGGGAAGTTTCACCCTGAATGTTGTTGGGGGTTACACTGAAGTAACTGTGGGCTTGTCTCATGGGACTCCCATATGCTGTATGTGTTTCATGTATGTGAAAAAATAGTAGGGAATTAAGTGGACTTCAGGCAGTAAGTGAAAGGTGTTATTAATTAATCAGCATAATGCTGCTTCTTCAAAAGAAAGATGTGCTTTCAGGTCCTGTAGGATGCCTCTGAGATTCTGTTAAGGTGCAGATTATCTGAACCCAAACTACAGCAGTGTAAAGTCAGGGCTGTTGCAGGTGATCTGCATACAAGGTGAAAACGTATGTTCTTTCCAACAGCTGAAGTAAACTGTGGGGCAATGCACCCCTTTATAATTAAAATTAATTATGTTGTAACCTTTCTCCATTCAAACCCAACTCACTATTATCTTCCAG
Seq C2 exon
CCTTACATCCACAGTGTGTTATTTGGGTTTCTGCTGTGCTGCTTGGAGATACGATACGGAGAAGCAGTTGCAGAACGTGATCCCATCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]