GgaINT1002768 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8211691-8212843:-
Coord C1 exon
chr18:8212752-8212843
Coord A exon
chr18:8211809-8212751
Coord C2 exon
chr18:8211691-8211808
Length
943 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCGT
5' ss Score
6.6
3' ss Seq
GACCCCATCCCTGCATGCAGGAT
3' ss Score
6.55
Exon sequences
Seq C1 exon
CCTTACATCCACAGTGTGTTATTTGGGTTTCTGCTGTGCTGCTTGGAGATACGATACGGAGAAGCAGTTGCAGAACGTGATCCCATCTTTAG
Seq A exon
GTGCGTACTGGGTGCGCTGGGAGCAGCTGGCATGCGACTCCATGGGCAGGCCCAGGGCTGTGTCAGATGGGACCCGCCTGCCTCGCCCTGATGGCAGTGGAATGGGATGAGAAAGCACCAAAATATTTTGCAAAATGTGTGCAAAGCCCACATTTTCAGTTTTAACCAGTTTAGGAGAGGAAATTGTGAATGGGGGAGGAAATTTTTATTCCTTTAGGTCATTATGGTCTCAGGCTTAATTTGCTCCGTTTCCCTGAGCATGTCTGCAGGCAAACACCCACCCAGTGTGTTGCAATAGAAGGTCAATTGAATCACAGTGTCATAGAAAGAACAGCAAATGTGATCTGAGCTCTTTTCGTTACATTTAATTGCTGAGCTTTTAGGGCATTTCACTGTAGCTGTTTACATTAATGGTTACAATTGAAATCCATCATTTTACCTCCTTCCCAAAAGCATCAGTAGAGTTCTCTGCAGGACAGAGTTTCCCTAAAGTTCCATCAGACCAAGGTCTTCTGCTAACCACTTACCTGTCGCCAGAAGTGTGGGACAGACCTCCCAGGTCACATGGGAGAAGACTTGTAATAGTACTTGATTGTCAAACATTAATGAGTGGGACTCAGGTATGGGGTTGGATGCTGAAATAGCTCCAAAATCTGTCCAGTGTGTTTATGTGACCTGGTAATTGGCATGTGTTGAGTGGGGGACTGGTCAATATTACTGGTGAAACACAAGCTAAAGTTGACCTTTATTTTCTCATGCATACTAGTGCAATTAATTTTTCTTCCCCTGCAAATAAATATTTGAACAATTGCCATCTGTGGCATAAATTCAAATAAACGATGCCAAGTACTGCATTGGTGCTGCCCATGGAACAAACTTTTAAGGCCCCATAAACCTGAGCATTCCCAGAAGGGCTGCATGGTGACCCCATCCCTGCATGCAG
Seq C2 exon
GATCCAGCGGAGGAGAGCCCTCCCCCCGCAGAACAATCACCCACCAGGGCAAGAGCCCCCCGAGGTGCAGGCAGAGCGGGAGCGGGCGCGGAGTGCGGTGAGCTCCCAGCAGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCACAGTGTGTTATTTGGGT
R:
CTTGGGCTGCTGGGAGCTC
Band lengths:
206-1149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]