GgaINT1002973 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C544]
Coordinates
chr1:75693032-75693648:+
Coord C1 exon
chr1:75693032-75693231
Coord A exon
chr1:75693232-75693584
Coord C2 exon
chr1:75693585-75693648
Length
353 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
GGATTTCTCATCCCTTTCAGGTG
3' ss Score
9.97
Exon sequences
Seq C1 exon
ACTGCTTTGACCATTCATGGGTTAATCCAAATTATGAAGATGGTTATCTCCATGTAAAGCGCTTTTACTCCCCTAGTAGGAGCTTCCTCAAAATTGAGCCCTCGTCTGAGACACTAAGCTGTGGCTCCTCAGCTGAGGTCCGGGTTCACTATACACCAGAGGCTGTAGGAGAGAAGAAGAAAATCGTCTTCTACTACCTG
Seq A exon
GTAAGCTTGCACTTCCTATACAGTCAGGATGTCACTGGCAATCAGAGGAAAGAGGTGGAGTTAGAAACAGCGGTTTATGGCAGCAGGCTTTAAACACTTCCCCATCATCCTACACATGTTCTTTTCCCAGTAAAATGACTGTAAACGTTTGGAGCAGAAGAGTGAGGATGTCCCATGTGCCCCCTGGGTGACCACTGGGACTCTGCTACAGAAGGCAGCTGAGCAGGGTGTGATTAGCTCCCTATTGCTCACACACTGAGCTCTCTTGCTTTCCTCTCAGAGCCACTCTCCCACCTCTTAAGGTTTATCTCATGCATAACCTCAAGCACTGCAGGATTTCTCATCCCTTTCAG
Seq C2 exon
GTGATGGCCAAGGGAATCATCAAGAAAGCAGGCACCAGCATTCTGGATTTGGACAAGGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PU(25.2=55.2)
A:
NA
C2:
PF077039=A2M_N_2=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCATGGGTTAATCCAAATTATG
R:
CACTTTCCTTGTCCAAATCCAGA
Band lengths:
254-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]