GgaINT1003018 @ galGal4
Intron Retention
Description
NA
Coordinates
chr6:30857231-30858486:+
Coord C1 exon
chr6:30857231-30857269
Coord A exon
chr6:30857270-30858174
Coord C2 exon
chr6:30858175-30858486
Length
905 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
CTTGTTTCCTCCTTTCCCAGGTG
3' ss Score
11.34
Exon sequences
Seq C1 exon
TTCCCACGTACACAACCACAGATGTCACCAGTCCTACAA
Seq A exon
GTATGTCTGCATTATTCCTGGTTTTTCTCTTCGCTATTTAGAGCTGTGTTTGTTGGTGTCTGAACACGTGAGCTTTGTCTTTTCCGTGGAATCAGGGAGTCCTCAAAGGTGCAGAGCTGGCAGGGACCCAGAGGGACGATAGAGCCCAAGTGGGGCTCTGCAGCGGACGGTAAAAGAGATAACTCATATATCTGAGAGCGCTGTCCAACTGGTTATTCAGCACTGATGGGCCTGGGGCCATGACCACTTCCCTGGGGGCCACTTGCTGTGCCCTGCCCGCCTGTCTGTGCACAGCTGTTCCCAGTACCCACACCAATCCTCCTGAGGCAGCTTTAAGCCATTCCCCTTTATCCGTCACGAGGAAGGTGCAGACAGCAACCACATCCCTTCTCAGGATCCTGCTCCCTAGGCTGAACGGTCCAGGTGACCTCTGCCACCCCTCATAAATTGTGCCATCTAATCAACTTTTCCATCATTTTTCTCCCCCTTTTTTGGACACAGTCTAAATGTTTCACATTCTTGCTCTGTAGAGCTCAAAAGCACACAGAGTATTTGGGGTGCAGCCCCAAATCTGTAGAGTGCAGGGGGACTGGTGTTGCCTGGCCAACTGAGCTGGGCTTAAAGCGGCGCCAAATAGGCTTGGCCCTCTGCTGACCATGGCACATCACAGTTCAGTGATGTGGAGCTTTCCATCCACCTGAACTCCCACATCCTTTCCATGAGGTGCCAGAGACGCAGAAAAGAACAACAGGAGAGGAGAGTCATGGAAATGCGGAGCCTAATTCAGCTGAGAGTAGCAATCCTCGTGGCCTCAGAGTCGTGGGGTGTTGAAACTGCAGCGTGAAGGGAAGGTGTGTGCGTGCTGCAGTGTTTTCCCATGTGTTCCTTGTTTCCTCCTTTCCCAG
Seq C2 exon
GTGCCTCTCTGAGCTTGGTGAATGGCCGGAACCGGTGTGAGGGGCGCGTAGAGATCTACTCCAATGGGAATCGGGGCACGGTGTGTGATGACGGCTGGGACATCAATGACGCCAATGTTGTGTGCAGGCAGCTGGGATGTGGCTTTGCAGTTTCAGCGCTAGGAAATGCCTATTTTGGACAAGGCACTGGCGCAATTTACCTGGACGATGTGCATTGCAAGGGGAATGAGTCGTCCCTCTTTAAGTGCCAGAGCAGTGGCTGGGGTGTGCACAATTGTAACCACTATGAGGATGCCAGCGTTGTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023424:ENSGALT00000038697:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACGTACACAACCACAGA
R:
ACAACGCTGGCATCCTCATAG
Band lengths:
342-1247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]