GgaINT1003040 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSY4]
Coordinates
chr20:11189030-11190725:-
Coord C1 exon
chr20:11190583-11190725
Coord A exon
chr20:11189193-11190582
Coord C2 exon
chr20:11189030-11189192
Length
1390 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
CAATGCCATTTGCAATGCAGGTA
3' ss Score
5.37
Exon sequences
Seq C1 exon
TTGTGCTCAGCAGCTCCTGGTGGTGCTTTCAAAAATGTATCAGAGAAAAAGAAGAAACCATCAGTTTGCAAAAAGGAAAAACCAGCAACAAATAAACCCAAGAGGAGCCACAAACAGAAAAAAATTAAACCCCCCTCAAAATG
Seq A exon
GTAAGGAATATGGATTCATATGGTCTCATCTTCCCTGGATACAAACATCATTATGCTGTGATGGGTGTAATAATGTCCACAGAAAGCCACCCCCAAAGTTCAACCTCATGAAAACTGGGGAAAAAAATAAATCTCATAGAGAGATCTATTCCCACACTGCAGCAGTTCCACAAACGTAAATTATCAAAAGTATCAAACATATCAATGTATTATTTGCTGTCAGGAGCGAACTTTTCTAAGCAAGAGAGACATACACCAAAGAAAGATGATGATCGGTCAGGTGACTGCTTCTGTGCTTTAGAACTGATTCTTATCTGTCAAAATTGTCAGCACTCTGTTTTGTTTGACGGGAAGCAAAATACTTCAGTTTTATTCCTGTTACAGTTAAGAGCAGTGCACAGGACCCTTTTGTGCTCAGATCTACATCTTCAACTTTTATTCATGAGAGAATGCAGAAGAAAAAAATCAAGTTGTAGCACTAAGTGAATAAAGCCAGCTGTAGTTTAAGTGATCATTCAGTTTAAATATGAAGCTGAAAGAACATAAGGCTATGGAAGGCACATTATATCAATCAGTGCAGTTCCTCTGACCTCAATGGCAGCTGATATGGGTGGAAGATTTAGCCTCCAATGTTTCAGGAGTGTGAGGTAGCAGAATGTCTGATTAAATGCTTCAATGAGAAACATCTTGTGTGCATACATCCCTCTTCTTTAATTTTATGACCAAAACCAGACCGAGCTTCTCCTTCAGGACAAGTCACTGTTGGTAACTTAATCACCATGTCTACCTTTGTAAACAGCACCTCAATTCTGAAGGATCATAAGACCACAAATGGAATACTCAGGTCTATACTACCCAAACACTCTCGTAGCATTCTTCTACACTTTCAGGTTCTTTTTTTCTCCTTCTTCCCCTCATTTCTTTTCTGCTGGTCTCAGAATTGATTTGGCCATATCAAAGAAGTACAGAGATTCAGCTGAGTACAGAGACCTGAAAGCCAATCTCTATCAGTAGCTAATTGGCCAAACTTCTAATAATGAAATGTAATGTATTTTTCTTATACACCAAACATCTAAATAAGCTGTTAGATTTACTTCGCACTGTGTGTATCATGTTTGATTCTATTGATACTGGAATGGAGACTTCCAACATAATTTGGTCCCAACCATTAAAATTAACTGAACCAGCTGGAGTAGATAATAAAGTAGTTGCATTATCTAGTGTGAGTTTTCTAAATATCTGAAACATGCTGTTCAGCAGCGATGGTAAATAGGTTGTACATAAGAAGTTGGTATTTTGCTTTTCTTTTATGTACAACTATGCACTCTCAAGTGATTAATGTGCATTTCAGTATTTATGAGCATGCTTTCCAATGCCATTTGCAATGCAG
Seq C2 exon
GTATGGAGGAAGGCACATACATGGATACACTCAGCTGAAAATGAACCGACTGAACAAGAGACACTGTTTTCCAAATAGAACACTGGATGTTTTGAAAAAGGGCTGCTCATCACGAGGCTGTAAATTTAACCCAAACAAGAAGTGCCATTCTCCTCAGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023526:ENSGALT00000039059:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGGTGGTGCTTTCAAA
R:
CTTTGACTGAGGAGAATGGCACT
Band lengths:
294-1684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]