GgaINT1003249 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L0H4]
Coordinates
AADN03010677.1:2489-3066:-
Coord C1 exon
AADN03010677.1:2743-3066
Coord A exon
AADN03010677.1:2647-2742
Coord C2 exon
AADN03010677.1:2489-2646
Length
96 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CAACATCTGCCCTCCTCCAGTTC
3' ss Score
7.54
Exon sequences
Seq C1 exon
CCAACACCGCCTTTGGCTTCTCACGTCTTCACATTTGACACTGCACTGAACTCCTTCCTGCTCCTCTCTCTTTCCTTCTTTCCTTCTTTCCACTCCCCTTTCTCTCTCCTTTCTCTCCCCCCTTTCTAATCCTCCCGAGCCCCTCCTTCAGTCCTTTCTTCTATCCCCCCCATCCTAACTGTCCACCCCACAGCAGTCTGTGCAAATACCTGTACTGAAGCACAAGGTTTCCACGCCTGCAGAGGGAGAACGACTGAACCATTTCTCAGAGCACAAAGCAGCACCAGAACCCCCAGCACACCAGAGGAGAAGGATCCCAACAAG
Seq A exon
GTAAGGCTGGGGATGGGGAACAAAAGAGTGGAATGGGTGGATAAAAGGGAAACAGAAAGAGGAAAACCACTTCTACCAACATCTGCCCTCCTCCAG
Seq C2 exon
TTCTGACCCCCAACTCCCAGAAGAGGACGTGCACATATCGGAGCTGGAGTCCAATACTTCCATGCCTCCTGTGGGAGAAGGAGACCAACGGGAAACATTTTCAGAGCACCAAGCAGCACCAGAGCCCCCTGAGGAGAGTGGAGAAGGACCCCAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024426:ENSGALT00000023131:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGGGAGAACGACTGAA
R:
TTGGTCTCCTTCTCCCACAGG
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]