GgaINT1003543 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GGJ5]
Coordinates
AADN03015180.1:2945-4086:-
Coord C1 exon
AADN03015180.1:3800-4086
Coord A exon
AADN03015180.1:3217-3799
Coord C2 exon
AADN03015180.1:2945-3216
Length
583 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
GCTGTCTGTCTGCTCTGCAGGTG
3' ss Score
10.64
Exon sequences
Seq C1 exon
ATCAATGGTGCTCTGGCCACCCTGCCTGCTTCTCCAACGCCCAATGTGAACGTTTCCCTGAGTGGCTCCTACGTGCAAGTCTCTACCAAGCTGGGCCTGCAGCTACAGTTCAACGGGGACCAGGAGCTCCTGGTGAGGGTGTCGGAGAAGCACAAGGGCAAGCTGTGTGGGTTGTGTGGGACATACACGGGCAGCAAGGAAGATGACTTCAGGCGACCTGATGGGGTCGTTGTGCCTGATTTCAATGACTTTGGAGCCAGCTGGATGGTGCCGGATGACGAGTGGAA
Seq A exon
GTGAGTGCTTGTTCTGTTGCATAGAGGCCAGGCAGAGGTTTGCTGTGAGTGGCCCAAGGGAGGAGGGTTGCTAAGGGCTGTCATGGGGAAGGGGAGAGGAGGCAGCTGTGGGAAAGCGTGTTTGAGCGCATGAAGGCTCCCAGGCAGCAGGCATACGGCCCTTGCATCTTCCCCCTCTGCTCCATCCACCCGCGGTGTGAGCGGTGCTCTCTCCCCGTGGGCACTGTGCTCTGGGTCCCTCAGTTACTCCTGTGTAGAGCCGTGCATCCCATTGCAAGCACGGTATCTCACCGTTCCCGACCCCAGAGTGAGGTAGGCTGGGCCATGAGCACAGTGGTTTTCCCAAGTTACCATGGTCAGTGCTGCCTCTGTCATTTTCCTGAACCCCCGTGAAGCCCCAGAAGGGAACGGTGACTGTGGGCCGCGTTGCTGACCCTTGCAGATGACATCTGTGTGTGCCTTGTCGTAGGGAGGGATGTGGACTCCGCAAAGACTGAGGTTTTGCACGGCACGCCTGTGGGGAACGGTTGTGGCTCAGGTTCACAGGCCGCTGAGAGCTCAGGGCTGTCTGTCTGCTCTGCAG
Seq C2 exon
GTGTAACACGACCATCTTCCCGCCTGTGTCCTGCTCCCCCTTGGAGGAGGAGGCAGCTAACAAGAAGTGTGAAGTGCTCACACAAGCCGGTGGCCCGTTCCAGCCATGCCACGCAGTTCTGCCACCCCAGGCGTACTTTGAGAGCTGTGTCTATGACCAGTGTGGCACGGGTGGCAGCACGGAGCAGCTGTGCAGTGACCTGAGTTCCTATGCTGAAGCCTGTGCTGCGGCAGGGGTTGTTCTGGGAGACTGGAGCTCTGGCACGGTCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026232:ENSGALT00000044408:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(49.3=78.1)
A:
NA
C2:
PF087426=C8=WD(100=82.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTACAGTTCAACGGGGAC
R:
CGTGCCACACTGGTCATAGAC
Band lengths:
357-940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]