GgaINT1003790 @ galGal4
Intron Retention
Description
NA
Coordinates
AADN03027099.1:3082-3345:-
Coord C1 exon
AADN03027099.1:3279-3345
Coord A exon
AADN03027099.1:3212-3278
Coord C2 exon
AADN03027099.1:3082-3211
Length
67 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CTCACCCCATGCCCCCGCAGGGC
3' ss Score
10.47
Exon sequences
Seq C1 exon
GATGAGGATGGCAATACTCTGTCCGACGAGGACATCTCAGCCGAGGCTGACACCTTCATGTTCGAGG
Seq A exon
GTGAGGGAAGGCCACCTGCTGCCGCTGGGCACCATGATGTCCCCCCACTCACCCCATGCCCCCGCAG
Seq C2 exon
GGCACGACACGACGGCCAGTGGGTTGGCGTGGCTGCTCTACAACCTGGCCCACCACCCACACTACCAGGAGCAATGCCGTCAGGAGGTCCGTGAGCTCCTCAAGGGCAGGAACGTGGAGGAGATTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026611:ENSGALT00000045652:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
NA
C2:
PF0006717=p450=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATACTCTGTCCGACGAGG
R:
CAATCTCCTCCACGTTCCTGC
Band lengths:
183-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]