GgaINT1004290 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GKM6]
Coordinates
AADN03013128.1:11986-12396:-
Coord C1 exon
AADN03013128.1:12373-12396
Coord A exon
AADN03013128.1:12040-12372
Coord C2 exon
AADN03013128.1:11986-12039
Length
333 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TAACCCCTGTTTTCCCTCAGGCG
3' ss Score
9.54
Exon sequences
Seq C1 exon
GCTGCACCAACCTGCTGCTGTCTG
Seq A exon
GTAAGTGCCCGTGCTCTGCGTGACACCTGCTTGCTGTACCCAGCCCTTCATCTCCTCTGCTTGCACCCTCTCTGGGTGGCCAGGACCCCCATACCACAACTGTCCCACTTGGGGTGACAGCACCCTCCAACCCCTTATGGGGCTCCCATGCCCTCTCCAGCCTGCAGCATCCTGGTGGCAGGTCGGGTGGTACTGGTGACAAGGACAGTGCTCCCAGCGTCACCAACACCATGCAAGAGCAGTTCTTGCTGGGGAGCCCTATGCCGTGCCATGGGGCTGGGGGTGGGGGCAAGAGATCTCCATTAGCAGGGGCTAACCCCTGTTTTCCCTCAG
Seq C2 exon
GCGGGAGGATGCCCCCTCCTTGCATGGGGACAAACCTATTCTGAAGAGGTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027751:ENSGALT00000044332:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]