GgaINT1004379 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NKE5]
Coordinates
chr16:389809-392771:-
Coord C1 exon
chr16:392739-392771
Coord A exon
chr16:392581-392738
Coord C2 exon
chr16:389809-392580
Length
158 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
CTGCTCTCCCTCCCTTGCAGGCC
3' ss Score
12.41
Exon sequences
Seq C1 exon
GGAAGGAGAAGAAGGATTACGAAGCAGCAGCAG
Seq A exon
GTGAATGCCAAGGGCAGAACTGTCCCCTGCCAGTGCTTGGGGTCAGGGCACTCTGGGGCCCCTCGTTGCTTTTGGGGTCACAGTGGTGGTGGTGGCATGATGCTCCATGCCCCACAGCGAGCACAGAGACAGGGCTCACTGCTCTCCCTCCCTTGCAG
Seq C2 exon
GCCACGACGGAGAATCCAGCGGCTCGGCCACAGCTTTAGTGTGGAACGGGGGCTCAGGAGGGGTCCCTGTGGTTGGAGCGGTCCCAGTTCCCTGCGCTCCCCCGTTGGGCCCACGGCCGGGGCAATACTGGGCCCAGCCCTCCCTGGAGAACCCCCAGGGTGGTGAGTCAGGATGCGGATGTGGCCCCACATGATACCATCTCTTCTCACCCGCACAGGAAGTGAACCTTCCATCTGAGTGCTGTGCTACTTCAGCCAGCCCTGCATGCATGTGTTTGGAGTTTGTGGGTGTGTGTATCTCTGTTTGCTCAACTTCCTGCATCTCCTCGGGCTGACGCAGTGTGTGCTCCCCTGCTCACACACTGTTTCCAACAGTTAGCACATGGGTTCTGCCCTGTGCTAGGCGCTCTCCTACCATGTAGGATTATCTTAGCTGGTGCCTGTGCCAATTGTACCCAGGTCAGAACGCCCCGGTCTCAACTTTGTTCAGCTGCTTTCTTTGTGAAAAGCAGCTCTCAGCGCTGTGCTCATTGTAGTCAGCCATTAGCTTCAAAACCTTGTTGGGCAGCTCATGCCTTGGATGGATGCTGCTGACCAGGCTTTGAGCCAAGCTGGCATGGTTTTGTAATTTTGCCATTGGTATTCCACATCATAGCATCATGGACAGCCCGGGTAATTACAGGGTTAATAGTCCGGTTCTGTGGACTGACAACGTTCCAGATACTTGCTTCTCGAAAGAGAAGAAGAACTGCGTATCCCAGAGGACCTCACGGTCAGAGAGGGAAGATACGGCACTGAAATCACGGGATATGAGTTGCGTGATCAGGCTCACACTCTCTCTCCGGCAGCCATGCAGAGTGCTGGGTGTGCTTCCGAGCTGTGCACCTTCATTCAAGCAGAGCTTTCGGTTTTGGAAGCTGTCTCTTATTTTAAATGATTTATAACCCGTACTTTCAATTTGATTGTATTATATTGTGTTATCTTGCATTCCAATATCACGGTTAGTAAAATAATGTTTCCACCTGAGATTGTTGCCACTGCTCTGTTCTTTTTCCCTCTCTGAGCCCAGCTCCCATTCCCCTGTCCCCTTTCCCTTCCCATTCTTGGGTGCCAGGGGGCCCACAGGCCCACGGCCTCCCTGTCACGGGCATAGACTGATCTAGATTGAGCTAGATAAGTCCGTGACAGCTTTTTGTGGAGAATGCGGGCAATCTGAAGCTTTTAACGCTAACAGAGAAAAGAAAGGATTTCTTTAAGCCGGAGACTGCCAGACTGCAAGGCATTGCTAGTGTGTGACCTTCATAGATGAGATTATAGTCTGGGCAGTCTGCCGAACTCCGGACACTGTACCCAGTAGTTGTTGTTGTTGTTTTTCCCCCATTTTAGCAGCTACCAGCTATGAGTCTGCTCTTTATTGCAGGAGCGTTGTATAAGGGATTAAGGACAATCATGATCTTGGGATATTATTGGCCTATAATTAACATCATGATTTCGTGCTGTGGAATTGTGTTCATGTATAACCAAATAAGGGCCCTGATGGAGACACCTGCCTGGTACCTTTATGCAATGTGGTATCATTTTAAGTTTGACACTTTCAAACCAGTTTCCAGGCTTTCTTCTCAGTTTGTCACGTGTTTTTTCAACTGCCGAGCTGGAGCTCATACTCTTGTGCATGTTATCAATCTCCTTGAATGTTTTCTTCTCCATTTGTGTTATGTGGAAGAAGTCTCCTCCAAAACCAGAGAATGCTGACTGGCAGGGAATATGGAGAGGTTTAGGAGAAATCTTAGAAGCGTGGGGACCCACAATGTCATGGCACTCCACTCTTGAACACCTGTGGGATCCCAGGAAACGAAGCCAGTATTTGAGTCAGGGATGGTGTGGCTCAGATAGATCGAAGGAGGTACGGCTTATTTGGGGCTTGGCTTGTGCTTACCGTGCTCTATGTAATACTCTTCTGGAGAGAGAGAGTTTCCAAGCAGAGGTTGAAGCCAAAGGGGGAAATCTCCAAGTCGAATCTGATCAGTCACAGGAGACACCAGTAGCAGTGCCTTCTGCTGCCCCTGTGGAAGGCAAGAAATGGAAGTGGGTGTCCACGCGTCTGGAATGGAAAAAAGAAGCAGCAGCTGCGGAGGAGGAGGTAGAGGAAGATCCAGGCCAGGGGGCCTCCTCAGAGCCACGAAAGGCAAAAGCAAAAACCAAGAGACACGGAGAGGCGAGTGATGAAGAGGAAGTCTCTATTTCTGTTTGCCGACCTCTGAAGATGACTGAAATCCAAGGCTCAAGGAAAGAGTTTACACGGCATCCGAACAAAACCCTTGTCACCTGGTTGCTTCGCTGTTGGGATGGCGAGGCCGGTAGCTTGTCTCTGGATGGTAACGAAGCCCGCCAACTCGGAGGCATTGCCAAAGACTCATCTATTGACAGAAGGATTAGTAGATGTTTGGATGGAGCCACCACCCTCTGGGAACGAATGTTAGTAGCCGTCAGGGAAAGACATCCCGTCAGAGACAGTCTGAAGCCTGTGATGTAGAAGTGGGATACAGCTGAAAAAGGTATCCAGTATTTGAGGGAAATAGCTGTGGTGGGAATGGTGTATGACCCTAATTTTGCTCCTAACGATCCACGCCAAGGTCATGATCTGCAGAGAGTGAGAACAATGCCTGATATATGGCAGAAACTCACAAGAACAGCACCAGATCTACCCCCAACACACGCTTCCATTTCAGCCATCTCAGAATTAGCAAACAGACTGGATGAAGTACAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027955:ENSGALT00000041159:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGATTACGAAGCAGCAGC
R:
CTGTGCGGGTGAGAAGAGATG
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]