GgaINT1004400 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GHD0]
Coordinates
AADN03015830.1:24-6689:+
Coord C1 exon
AADN03015830.1:24-330
Coord A exon
AADN03015830.1:331-962
Coord C2 exon
AADN03015830.1:963-6689
Length
632 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CTCCCCCTTCCCCCCAGCAGGTC
3' ss Score
9.48
Exon sequences
Seq C1 exon
TGAGGGCAGCACCCCCTTTGCGTAACCCCACGTCCCACTCATAAAATAGGGCAGCATCTCTCATTGCCCCCACCAACACCCCTTTCCCCCTCTCCCCCCCCCCTCCATGCTTTGGTCCCGCAGGTGACGGTGCGTGTGAAGCTGGAGGAGGTGCCCCCAGGGAACACGGAGGACCCCGAGGTGGTGCTGGACCCCCCCAGCCCCCCACCAGAGCCCACCGGTGATGAGTGGTGGGAGGGCAATGGCAGGTCGGACCCTGAGGAGGAGGAGGAGGAAGAGGAGGAAGAGAGAAGTCTGCAGGAAACAG
Seq A exon
GTAAAGGGGTGGAGGGAAAAAATCCCTATTTTCCCCCTAAAAATGCACGTGGGCAGCCTGGAGATGGAGGGGTCTCCTGCGGTGGGTTTGGTGCTGGGCAGTTCTCATAGGGTTTTGTGCTGGAGTGATGGCTTCATCTTCATCCCCACCCGGTATGGTTTGGTGGAGCCAGTGGTGACGTTGGGATTCGGAGTTTTGCTCAGTGGTGGCGGCCCCTTCCTCATCTCCCAACACCATGGACCCACCAGCGGCGTCGGGGTTTGGATTTTGCTCAGTGGTGATGGTTTCATCTTCATCCCCACCCAGAACGGCTTGGTGGACCCAATGACGGTGTTGGGATTTGGGGCTCTGCTCAATGGTGGTGGCTTCCAATTCAACCTACCCAGAATGGCTTGATGGGCCCAATGATGGTGTTGGGATTTGGGGCTCTGCTCTACGGTGGTGGCCTTGTCTTCAACCCCCACCAGTATGGACCAACTGGTGATGCTGGGATTTGGGGTTTTGCTTGGTGGTGGGAGTTGGACCGTTTCCACCATTGGTAGAGAAGACCACAGGGCGACGGGGCTTTGGAGGAGTGGGGTGATGTCCCACGAGGACCAGCTCCCAAATTTCCTCCCCCTTCCCCCCAGCAG
Seq C2 exon
GTCCCACCGCAGCCAGCACGGAGCCGGAGGACCCCATTCTGACAACCCAAGACCCCCCTCATCCCCCCAGCATCCCCCAAGGAGGCCCCACCACCAGGACTCCCACGCAGACCGAGACCCACCGCCGCCCCAGAGCGATCCCAAAGGATCCCACCGCCTTCCCACCGCCCCAAACACCACCCAGACCAACGGAGGACACCGGGAACACTGAGAAACCATGGGCGAAACCACCAGAACACGGCAAGGAGCGTCCCTACCCATGTGGGGAATGCGGGAAGACCTTCGGCCGCCTGACCCACTTGAAGACCCACCAGCGGACCCACACCGGGGTGAAGCCCTACGCCTGCGGTGCGTGCGGGAAAAGCTTCGGCCACCTCTCCACTCTCACCACCCACCAGCGGCTGCACACCGGCGAGCGGCCCTACGCCTGCGGGGCGTGCGGGAAGACCTTCACCAACCCATCGGACCTCAACAAGCACCAGAGGTCGCACACGGGAGAGCGGCCCTACCCCTGCGCCGCGTGCGGGAAGCGCTTCAGCCAGCAGTCCAACCTCACCATGCACCAGCGCAGCCACACCGAGGAGCGGCCGTACCCCTGCGGGGTCTGTGGGAAGAGCTTCAAGTACCTGGCGGACCTGACGGTGCACGAGCGCTCACACACGGGCGAGAGGCCCTTCCCCTGTGCTCAGTGTGGGAAGAGCTTCAGCAATAAGTCCTCGCTCGCCCGGCATACGCGGATCCACGCGCGGGCGGCCACCAGGGACAAGTGATGGTGGGTCGGTGGTGGGATTGGGGGTCTGGGGGAGGTGAGGAGAGGATGATCCACCAGGAATCGCCGTTGGGGTTGCAAGCATAGCTAGGGGTGAAGATAAGCTGATGGTTGAGGCTCCGAGGATGGTTGGCGACCTCCAAGGTAGCCCAGGAGGCCCTGAAGCTGTGCAGTACTGAAGAAGGGATCCAATTCTACTTGTTTGAAAACTTGGTAGACCCAGGACACAACGACTTAGTCCCAGAGAAGATGGAACATGGGTGAGGGTGAAGAGGAGGTGATGGCTGATGTCCCTCGAGAGCTTGGTGGCTCCAGAACTTTGTTCCCTGGACCCAGAGGAGATACAACACGGACGAAGGTGAAGATGACCTGATGTCTCCCATGAGCCTGGTGGCTCCATGATGCAGCTCACTGGTCCCAGAGGAGATGTAACGTGGTTGTGGACCATCAGAAGATGATCTGATGGTTGATGTTCTCCATGAATTTGGTATGTGACTCCTTTAGTCTCAGAGGAGACAGAAAATGGATGAGGCTGAAGGCGAGCTGATAGTTTATGTCCTCCTAAGTGCTTGGTGACTTCAAAACTTTGTTCCCTGGATCCAAAGGAGATAAAACATGAATGAAGGTGACAATGAGCTGATGGTTGATGTCTTCCAAGAGCCTGGTAGCCCCAAAACATGTCTCCTTTGTCCCAGAGATGTAATGGATGAGGGTGAAGAGCTGATGGTTGATGTCCCTCAAGATGGATGAAGGTGGCAATGAACTGACAGTTGATGTCTTTTATGAGCCTGGTGGCTCCAGGACTCGATTCTTTAGTCCTAGAGGAGATTCAATATGGATGAGGGTGAAGGTTGATGTCCTTCAAGATCTTGGTGGCTCCAAAATCTGGTTTTCTGGTCCCAGAGGACCATCCAGCATGGATGAAATGTCTGATGGATGATGTCTGCCATGAGTTCTTGGTCTCACCTCCACACACCCCACCCTCATCTCCACTACCAGGACACCCCATCCCCTCCAGCTGAGCATTCCCAGACAAATCTTACTGTTTTTTTTCCCCCCCAGTATTTATTCATTGTCACTCCTGCAGCGAGTGACATCCTCCTCCCCAGGCCTTAACGCTCCAGCACCGACCTACCTCATGGACCACTTGACATGCCCAGGGCTCCACGCCTCCTCCCTACGGGTTCACCCCGCTTTCTCCCCTCCCCATGGCTATAACAAAAGTTTTACCCATTTCTCTGCATCCTCTGGTGTTTCTTTAGTTGTTTGTTTGTTTGGTTTTCTGCAGGGGCAAGAGGAAGAACTTGCTCGTGGGAAGGCAAGGAATTGGGGGATGCCAGGTGCAAATTTTAGAGGAATTCAGAGGAAAAATCAGAAGAATTAAAGTGGAAGCTGCTGTATGTGGCACGGGTGGGGGACAAGGGAAATAGGGGTGCATTAGGTTTCATGGGGGATGATAACGAGGGTGTACAGGGTGTCTTGTATGTTGCTGGTGGGGCTCGTGACTCCCCAAAGTCACAGCAGTTGGGGGACAGTCCTGACGCCTATGAAAATCCAATGAGAATCCAATGGGGATGCAGTGGGAATAGAGCAGGGACACAATGGGTATCCTATGGAAAACAATGGAGACACAACAGGGATCCTGTGGGGAAGCAACGGGGATACAATGGGGACACAACAGGGATCCTATGGGAATACAGAGGAGACCTAATGGGGACCCAATGGGGACCCAGTGCAGATCCTGCAAGGACAAAGCCTCCATCCTCCTCCTCCCGAGATGATGCCAAGACGCGTGCACGTCATCTCATCCCAACAAACCACGCAGGTAGATTTGTTTGGTTTGCAATTATGTTTCTCATAGAACAGGAAAAGAAAAGGAAAACACAATGCAGGGGAAGATTACGTCCATCCAACTCTGGGTGCAGAGAGGTTTCTTGATGTGCAGCTGCTGTGCTGGTTCAGAGAGAGGCGCTCGGATGATGGTTATTGTGAAATAAAGGAAAAAAAGAGATCACAAAGAATGCATTATTCTGCATTAGGGGTTGCTGCTGTGTCATTTTGAGGGAGATGGGAGGTTAGCGGGGAAAAAGCAGAAGATGAAGATTGCAAAAATATGCATTTTTCCACACTCCACGTTGTTGCTGTGGCGTTTTAGGGAGAGATGTAGGTTACTGGGGAAATACAACAGACATAGCAGTCTGCAAAACTACACCGATTGGAGGAAAAAACAATGCATTGCATGGCATTCTGCTGCACGCGGTGATCCCCATCACCACCTGCTGTGCTCAGCACCGTGCTGAACCAGGAATGGGCCCGCACCACTCAATGCCAGCCCGGACGCCCACCACCTGCTGGCTGCGGGCCACCCCGGTCACCGCCACCTGGTATGGTTGGCCATCACCAAAATTCCTGGTGAGATCTGCAGTGAATGGGATGCGGGCATCCAGCCGGCGTCCCACCATAGCTACAGTGCACATCGTATGGGGCCGCATCTCCAGCTCAACCTTGTGGCTGTGTTCGATGTACTCACCAGCGCTGGCTTTTCCCAGCCAGGTGACATTGGTGATGCTGGTGGCCTCCCAGCTCATCCCATTGAAGGCCAAGAGGCCGGCTTCCAGCACCCCGCGGATGCTGCTGAAGATCTCCTGGTCCAGCTCCCAGTCATGCTCCACCTCGGTGGCTTCTTCCAAGGTGACATCTTGCCGTGTCCCTTGGCAGCCTTCGTTTTTCACTGTGGTCTTTGTTATGGTGACATCCTCGCTGTGCTCCACGGCTGCGCTCACATTGTAGAGAACACCTGAGATGGTGATGTTTGCTGGGCCCGTCTTCACAGTCAAGACTTGGTACCACTTGAACCACACCTCCTTGCCATCCACCGCCACAAATAAAGCCCTCTGCTCCTTGGAGACATTCCCCAGGCCGTACCGGTTCCTCCCCACATAGATGTCAAATGACTCACGGCCCTCTACTGCATTCTCAGGTACATCACCGAATGAGTCATTCACCCATTGCAGCGCCTCGAACTTTCCTTTGTTGACCAACACCTTGAATTCATAGGATCGCAGCGCCAATTCTCCATATGCAAAATAGCAAAATGGACCCCGGCTGGGAACGTAGGAACCAATGCTGCAGTGCCAAGACGGTGTTAAGCAGACATACTCTGTCACGTTGGTGTAGGCGTTCCAGTTGGACACGGTGTCGGCTGGTAATTCACCACGAAAAAGCTCCCATGACAGCCAGGAAGGCAACTCCTTGCCTTGCACCCTCTGGAAAACAGTCCAGCTGGAGGCTGCAAGGAAAAATAGGCTGTTTTGGCCAAATGGGAAGAGGCATTTGAGATGCCTCCATCCCTCCACAGCTTCTGGAGCAATGGTCTGCAAGATTTCCCACTGGTGGAGCAACCAGCACAGACAACCAAGATGTGGAATCAATTTCAATCATGTGGAATCAAAGGACTGTGGATTTGTGGAATTATGGAATCAATGAAAGGATCACAGAATCGTGGAATCAAGGAATCATAGAGGCATGGAATAAGGGAATCAAAGAACCATGTTATCAATGAAGGTATCGTAGTATCATAGAATCAAAGGATCGTGGGGTCAAAGGATATCCTGAAATGGAAGGGACCCAGATGGATCACCAAGTCCAACTCTTAGCTCTACACCACCCAGAATTCAAACTGTACTTCCAAGGCCACTGTCCAAAATGCTAAGTGAGACCTTCAGTGATCCTCTGTGGATTTTTGGGGAGAAATGCAGAAAATGGAGATATTCACGATGTCAGGATGGAGGAGAGCAAGACTCACCAGGGTGCTGGAGAAGCTTCCTTCCCACTGGTGACCCAGGAGCTCCATCAGCCCCATTGTGGGTGAGGAAGAGGAGGGCAGTAGTGAGGAAGAGCTGTGGGGAAGATGAGGGCAGATGTCACCCAATGAGGACGTTCCCATCAGTGACACCCATCAGGTCACCATCATATCCCAACATGACCTTTTTCCACCTATTTTGGGGGATAAAATCCTCCCTGCCCGTGTTGACACAGCTTTAATTGTTAACCAGCTGGGAGGAGGAACGCTGGGAAGCACAACAGAGCACCCGTGTGCAACGACCACGTTTCAAAGAAAAGAGATTACTATTATTATTATTATCAACTAAAAAAAAAAATTATTTTTCTGGCAGCCAGGAATTTCTTAAAAATGATTAAAAATCCCCCCCCAAAATGACCAAAAATGTCATACCTTGCTCGTGAGCATCCCGCCCGGCCAACTACACACTGTGATTTAAATACACACATATTTGTATATAAATGCGCGGAAGACATAAAACATATAAAATACATAAACATTTAAAACAAATATAAAATACATATATATATATATTTTTAATAAAGAAACATTTATTCCAACAACCCCATGGACACACTCTCCCATCCCATCACACCAACCCCCATGGCTCAAACAACCCCATCCTCGCGCAGCTCCAACAAGGCTCCATAAAACTCCCCATCTTGGGGCTAAAACCAACAGTTTTGGGTCTAAAGCCAACTATTTTGGGTTCTGCTGAGTTCTTCACCTGTCAGGCTCAGTGCAAACCCCAAAAGGTTCTCATACCTTGTATCTGTTCCCACCTGCAATCCTCACCACAACGTAAACCCTGTTATTCTGGGGTCTTTTAGGTCCTTTTTGGGCCACTTCTGAAATAGAACAGTTGGCCGTGCGCAGGCAGCAGCCCAGGAAAGGGCCAAAGTCTGAACAGGGAGAGAAGTGCAAATAAATAAAATGAACGGGGTGGTGATTACTGGGAAATTGGGAAATTCTGTGTTTTCTGCACAAAATCAGCACATCTTTTTATCAGGGTGGGAAAAATGGATTGCTGGCACCCGAAGAACAGCTTCAGGCCACACAAAACACCCACTGCCAGGAGGTGCTGGGGGCACCAAAGCAGCTCACCTCACCCCAGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027978:ENSGALT00000044672:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.574
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF102634=SprT-like=WD(100=42.8),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=10.1),PF134651=zf-H2C2_2=WD(100=10.1),PF134651=zf-H2C2_2=WD(100=10.1),PF134651=zf-H2C2_2=WD(100=10.1),PF134651=zf-H2C2_2=WD(100=10.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGGAGGAAGAGGAGGA
R:
GTGGGTCTTCAAGTGGGTCAG
Band lengths:
355-987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]