GgaINT1004423 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GIT4]
Coordinates
chr5:16203895-16204605:+
Coord C1 exon
chr5:16203895-16204197
Coord A exon
chr5:16204198-16204290
Coord C2 exon
chr5:16204291-16204605
Length
93 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGC
5' ss Score
4.37
3' ss Seq
ATCCCCACTCTCTCCTGCAGCTT
3' ss Score
9.7
Exon sequences
Seq C1 exon
GGTTCTCCCGGCTGGCCGGAGGGGACAGCGAGTGCTCTGGGAGGCTGGAGGTGCGGCAGGGCCAGGCCTGGGTCACCGTCTGCCACGGCCATGTGGACCACATGGCTGCCCAGGTCGTCTGCAGGGAGCTGGGCTGTGGTACTACAGTGGCCCTACCCGGAGCTGGGCAGTTTGGAGCAGCAGCACTGCCGTTCTGGGATGGCGCCTTCAAGTGCAACGGCACCGAGCCCCTCCTTTCTGCTTGCACACAGCAGCCTCCTCACATTGAGACCTGCACCCATGCTGCTACAATTATCTGCTCCC
Seq A exon
GTAAGCTCTAGGGCCATGGGTCTGCATCAGCCCCATGCAGTGTGGCATGCCCAGGCAGGCCCTCACTCCCAAAATCCCCACTCTCTCCTGCAG
Seq C2 exon
CTTACACCAAGTTCCAGCTGGTGGACGGAGGCTCAATCTGCACAGGGCGAGTGGAGGTGGAGGCACGAGGGGTGTGGGGACCCCTGTGTGCCACTGCCTGGGACCTGCCTGATGCACACATCCTCTGCCACCATCTGGGCTGCGGCTCTGCCATCTCCCTGCCCCCACCCGGCCATTTCGGGATGGGAACAGGGATGCCGCGGAGCGATGCCCTCAGATGCAGTGGGAGCGAGCGGCACCCGGGCCAGTGCCCCGTGGAGGTGCTGGGGCAGCCCGCCTGCCCCCCCGGGCACACTGCAGCCGTCAACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028071:ENSGALT00000044455:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.1)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGAGACCTGCACCCATG
R:
GATGGTGGCAGAGGATGTGTG
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]