GgaINT1004514 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GK36]
Coordinates
JH376407.1:102684-103496:-
Coord C1 exon
JH376407.1:103463-103496
Coord A exon
JH376407.1:102783-103462
Coord C2 exon
JH376407.1:102684-102782
Length
680 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CACTATTTCTATCATTTAAGCAT
3' ss Score
5.45
Exon sequences
Seq C1 exon
ATGCTGGAGACTTATGAGTGCATAGCTTCGCTGG
Seq A exon
GTAAGAGCTTTGCTGCCTTTCCTCCTTGTCCAGGAACCTTAGGCTGTGCAGGATGGGCCTCTGCAAGCATGACAGAGATTAAATACGTTAAAATTACCTATTGACTAATGCCCCATAAAAAATGCATGATTTTCAGAAGCCATTAGTGTAGTTACCATTCTCAAAAAAGACCCAGAATCACTGCTGGGATCAGACCTCTACATGCTTCCTATGTGTTACTGTGTCTTCACCAGCTCCAACAACAAGCTACCTCCCTGCCTTATTCCTTCAGCACTTTCTGATCTGTTTGCAATCTGTATCTCTTCTGCAATCACTTTACCCCTCTTATCTTGATGGCACAGCTTAGTGATGGCCCAGTACAGTAGTAAGAAGTGCAGCTGGGAAAAAGCACCTTCTAAATACTCCTTCCTTGGTTGTTCCATGTAAATCTTCCCCTCAGCATTACCTTCCTCTGCTTTCTCCCTTTTTGTAAAACTCACTTCAGCAATGTGGAAGAAAAGAAATTCAGAGATGGAAAATCCTGCCATACTCCAAAGCAAGGCAGTCTGTGTTGGCCCCACGTCACTCAGGCCCTAGTTGTGGTTTCATGAGAAGGAAGGGGGACACAGTGGAGGTGCTGCGTAAGCAGCTTTGCCAGAATCAAGGAAATGCTTTCATCTCCACTATTTCTATCATTTAAG
Seq C2 exon
CATCTAAACCTGTGGTGATCCCCCTGCTCGAAGGAGGGGAAGATCCCTGGATCCCAGATGTACACAGCCTGAAGGACATGGCAGGAGACATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028293:ENSGALT00000044698:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]