GgaINT1004965 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KYS6]
Coordinates
JH375196.1:7102-7346:-
Coord C1 exon
JH375196.1:7225-7346
Coord A exon
JH375196.1:7134-7224
Coord C2 exon
JH375196.1:7102-7133
Length
91 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
ACACTTCTTCCTGTCTGCAGGGA
3' ss Score
10.43
Exon sequences
Seq C1 exon
AGCCACAGCCCAACCTGATCCCTTCTGGGGCTGGGGCAGTCATCGCCATTGTGGCTGTCATCGCTGCGGTCGTTGGATTGGTGGTGTGGAAGAGCAAGTCAGATAAAGGCAGAGAGCTGGGG
Seq A exon
GTAAGGCAGTGGTTGCAGGGCGCCCTGGACTCCCTCAGGAGTGCCCGTGCTCTGACATGAGCCCAATGCTGACACTTCTTCCTGTCTGCAG
Seq C2 exon
GGAAGGAAAAAAGGATTACGAAGCAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029093:ENSGALT00000000460:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCCCAACCTGATCCCTT
R:
CTGGTGCTGCTTCGTAATCCT
Band lengths:
151-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]